Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0422 ATGAACGGGAAAATAATATTCTCCGCAATTTCCCTCATCCTTGTGGTGGGGGTGGCGATCGGCGCCGTTGTGGTGGTTCACAACAAGAGCAAAGAGCCTGAGGTCACCGCCCAACAGACTTCCGTGAAGGCAATGTGCCAGAACAGCGAGGACAAGAAGCTTTGCCACGAGACTCTCAGCAACGTCAGCGCCAGCTCAGACCCAAAGGCATACCTAAGCGCCGCAGTGGAAGCCACCACCAATAGCGTCGTCAAGGCCTTGAACATGAGCGAAAAGCTCATGGCCGAGCACGCTAACGGCGACAAAGGCGTTAAGATGGCTCTCTCTGACTGCAAGGAATTGCTCCAATTCGCCATGGACAGCCTCCAGTTATCCACTGACTTCTTGCGTAACAGCAGCATCCAGGCCCTGAGCGACCAATCCCCTGACTTCAAGAATTGGCTAGCTGCTGTCGTCTCCTACCAACAGTCTTGCATGGAAGGCTACGATGATAAGAACGAGGGCGAGAAACAGGTGAAGTCTCAGCTGCAGGGGCAGGGTCTGGACGACATGGGAAGGCTCACTGGCGTAGCCCTCGACATTATGGCTGATCTAACCAACATCCTCAAGCAATTTGGGTTGAAGCTGGAAGTCAAACCTGCTTCCCGTCGTCTTCTGGAGGTGGACAGCGAAGGCTATCCCACCTGGTTCTCGGCTTCGGATCGCAAGCTCTTGCAGAAGATAAGGAGGGGACATCATGTCAAGCCCAACGTAGTGGTGGCCCAGGATGGGAGCGGGCAGTTTAAGACCATCATGGAGGCTATTAACTCGTATCCTAAAGAGGGGGTTAAGAAAGGCAGATATGTGATCAAGGTGAAGGCAGGAACATACGCTGAGTACGTCAACATTCCGAAAACAGCAGTCAATATCCTCATGATTGGTGAGGGCGCCGATAAAACCATCGTCACTGGTAACAAAAACTACGTCGATGGAGTCAAGACAATGCAAACTGCTACCTTCGCCAATACTGCAAGCGGGTTCATCGCCAAGTATATGTCATTTGTGAACAGCGCTGGTCCGGCAAAACACCAAGCAGTGGCACTCAGGAACCAGGGAGATATGTCAGCTTTCTTCGATTGCGCCATAGTGGGTTACCAGGACTCCTTGTATGCTCAAACCAACCGTCAATTCTACAAGAACTGTGATATCTCCGGTACAATTGACTTCATCTTCGGAGTCTCTACCACATTGATCCAGAGCTCTAAAATCATTGTGAGGAAGCCATTAGACAACCAATTTAACACAGTGACAGCAGACGGGACAAGCCAGAAGAATATGCCCACTGGAATTGTCATCCAGAACTGTGACATTGTTCCAGAGAATGCTCTATTCCCTGTGAGGTTTACTTTGAAATCCTACTTGGGAAGGCCATGGAAAGCCTACTCAAAAACTGTGGTTATGGAATCCAGAATAGGTGACGTTATCCATCCAGAGGGGTGGATTCCTTGGGAAGGAAGCATGTACCTGGACACCTTGTACTATGCTGAGTACAACAACGAAGGACCCGGTGCTAATGTTCAAGGCAGGGTGAAGTGGCCAGGTTACAAGGGCCTCCTTAGTAAGGATGAAGCAGCCCAGTTCACAGTTGGCCAATTCCTCAAAGGTGGACCCACCTCCAGAGCTGAGGATTGGATGAAGCCTCTTCACCTTCCTTTTGACCTTGGCTTCTCCAAAGTTTAA 1719 0.5044 MNGKIIFSAISLILVVGVAIGAVVVVHNKSKEPEVTAQQTSVKAMCQNSEDKKLCHETLSNVSASSDPKAYLSAAVEATTNSVVKALNMSEKLMAEHANGDKGVKMALSDCKELLQFAMDSLQLSTDFLRNSSIQALSDQSPDFKNWLAAVVSYQQSCMEGYDDKNEGEKQVKSQLQGQGLDDMGRLTGVALDIMADLTNILKQFGLKLEVKPASRRLLEVDSEGYPTWFSASDRKLLQKIRRGHHVKPNVVVAQDGSGQFKTIMEAINSYPKEGVKKGRYVIKVKAGTYAEYVNIPKTAVNILMIGEGADKTIVTGNKNYVDGVKTMQTATFANTASGFIAKYMSFVNSAGPAKHQAVALRNQGDMSAFFDCAIVGYQDSLYAQTNRQFYKNCDISGTIDFIFGVSTTLIQSSKIIVRKPLDNQFNTVTADGTSQKNMPTGIVIQNCDIVPENALFPVRFTLKSYLGRPWKAYSKTVVMESRIGDVIHPEGWIPWEGSMYLDTLYYAEYNNEGPGANVQGRVKWPGYKGLLSKDEAAQFTVGQFLKGGPTSRAEDWMKPLHLPFDLGFSKV 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0422 572 PANTHER PECTINESTERASE 16 559 - -
Dere02g0422 572 Pfam Plant invertase/pectin methylesterase inhibitor 41 194 IPR006501 GO:0004857
Dere02g0422 572 NCBIfam pectinesterase inhibitor domain 23 176 IPR006501 GO:0004857
Dere02g0422 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 198 IPR035513 -
Dere02g0422 572 Gene3D - 244 568 IPR012334 -
Dere02g0422 572 Pfam Pectinesterase 250 548 IPR000070 GO:0030599|GO:0042545
Dere02g0422 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 199 IPR035513 -
Dere02g0422 572 SUPERFAMILY Pectin lyase-like 246 550 IPR011050 -
Dere02g0422 572 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Dere02g0422 572 SMART PMEI_2 37 194 IPR006501 GO:0004857
Dere02g0422 572 FunFam Pectinesterase 244 569 - -
Dere02g0422 572 CDD PMEI-like_3 44 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0422 Dere-ChrDere02 4206646 4208455 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0422 5 569 Carbohydrate Esterase AT3G05610 39.161 2.81e-136 409