Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0421 ATGAGCGGGAAAGTGCTCATCTCTGCAGTTTCCCTCATCCTTGTGGTGGGGGTTGCCATCGGCACAGTTCTGGTGGTTCACAAGAAGAGCGGTGATTCTGGCATCGCCGCCCACCAAAATGCAGTGGCGAAGATGTGCCAGAACTCCGACGACCAAGAGCTCTGCGAAGACACTCTTAGTAAAGTGAATGACACCTCTGACCCAAAGGCATACCTAACTGCCGCAGTGGAAGCCACCACCAACAATGTCATCAAGGCCTTGAATATGAGCGATAGGCTCATCGTGGATCATACCAACAGCCATCAAGGTATCAAGATGGCCCTCGATGACTGCAAGGACTTGCTCCAATTCGCCATGCAAAGCCTCCAATCATCCGCTGACATGTTGCGTAACAACGACATCAAAACCGTGAGCGACCAATCCCCTGACTTCAGGAATTGGCTGGCTGCTGTCATCTCCTACCAACAGTCCTGCATGGAAGGCTTCGACGACAACAACGACGGCGAGAAACAGGTGAAGTCACAATTGCAAACGGAGGGCTTGGACAACATTGGGAAGCTCACTGGTATTGCCCTCGACATCGTCGCTGATCTGTCCAAATTCCTCGAGGGATTCGGGTTGCAGCTGGACGTGAAACCTGCTTCCCGTCGTCTTATGGAGGTGGACAGCGAAGGCTATCCCACATGGTTCTCGGCTTCAGATCGCAAGCTCTTGCAGAAGATGAGGAGGGGACATCATATCAAGCCCAACGTCGTGGTGGCTAAGGATGGGAGTGGGCAGTTTAAGACCATTACGGAGGCTATTAACTCGTATCCTAAAGAGGGGGTTGGGAAAGGAAGATACGTGATCTTCGTCAAGGCAGGCACGTATGCTGAGTACATCATAGTTCCAAAAACAGCAGTCAACATCCTCATGTATGGTGAGGGCGCCGGTAAAACCATCGTCACTGGCAACAAAAACTTTGTTGATGGAGTCAAGACAATGCAGACAGCCACCTTCGCCAATACTGCAGATGGATTCATCGCCAAGTATATGTCATTTGTGAACAGCGCTGGCCCGGAAAAGCACCAAGCAGTGGCACTCAGGAACCAGGGAGATATGTCAGCTTTCTTCGATTGCGCCATAGTGGGTTACCAGGACTCCTTGTATGCTCAAACCAATCGTCAATTCTACAAGAACTGTGATATCTCCGGTACAATTGACTTCATCTTCGGAGTCTCTACCACATTGATCCAGAGCTCTAGAATCATTGTGAGGAAGCCATTAGACAACCAATTTAACACAGTGACAGCAGACGGGACAAGCCAGAAGAATATGCCCACTGGAATTGTCATCCAGAACTGTGATATTGTTCCGGAGCCGGCTCTCTTCCCCGAGAGGTTTACATTGAAATCCTACTTGGGAAGGCCATGGAAAGCATTCTCAAAAACTGTGGTTATGGAATCCAGAATTGGCGACGTTATCCATCCAGAGGGGTGGATTCCTTGGGCGGGAAGCATGTACCTGGACACCTTGTACTATGCTGAGTACAACAACGAAGGACCCGGTGCTAATATTCAAGGCAGGGTGAAGTGGCCAGGCTACAAGGGCCTCCTTACTAAGGATCAAGCTGCTCAGTTCACAGCTAGCCAATTCCTCAAGGGTGGACCCACCTCCAGAGCTGAGGATTGGGTGAAGCCTCTTCACGTTCCTCTTAACCTTGGCTTCACCAAACCTTAA 1719 0.5032 MSGKVLISAVSLILVVGVAIGTVLVVHKKSGDSGIAAHQNAVAKMCQNSDDQELCEDTLSKVNDTSDPKAYLTAAVEATTNNVIKALNMSDRLIVDHTNSHQGIKMALDDCKDLLQFAMQSLQSSADMLRNNDIKTVSDQSPDFRNWLAAVISYQQSCMEGFDDNNDGEKQVKSQLQTEGLDNIGKLTGIALDIVADLSKFLEGFGLQLDVKPASRRLMEVDSEGYPTWFSASDRKLLQKMRRGHHIKPNVVVAKDGSGQFKTITEAINSYPKEGVGKGRYVIFVKAGTYAEYIIVPKTAVNILMYGEGAGKTIVTGNKNFVDGVKTMQTATFANTADGFIAKYMSFVNSAGPEKHQAVALRNQGDMSAFFDCAIVGYQDSLYAQTNRQFYKNCDISGTIDFIFGVSTTLIQSSRIIVRKPLDNQFNTVTADGTSQKNMPTGIVIQNCDIVPEPALFPERFTLKSYLGRPWKAFSKTVVMESRIGDVIHPEGWIPWAGSMYLDTLYYAEYNNEGPGANIQGRVKWPGYKGLLTKDQAAQFTASQFLKGGPTSRAEDWVKPLHVPLNLGFTKP 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0421 572 PANTHER PECTINESTERASE 18 559 - -
Dere02g0421 572 Pfam Pectinesterase 250 548 IPR000070 GO:0030599|GO:0042545
Dere02g0421 572 NCBIfam pectinesterase inhibitor domain 22 196 IPR006501 GO:0004857
Dere02g0421 572 Pfam Plant invertase/pectin methylesterase inhibitor 41 194 IPR006501 GO:0004857
Dere02g0421 572 Gene3D - 244 568 IPR012334 -
Dere02g0421 572 SMART PMEI_2 37 194 IPR006501 GO:0004857
Dere02g0421 572 FunFam Pectinesterase 244 569 - -
Dere02g0421 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 198 IPR035513 -
Dere02g0421 572 SUPERFAMILY Pectin lyase-like 246 550 IPR011050 -
Dere02g0421 572 CDD PMEI-like_3 45 200 - -
Dere02g0421 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 200 IPR035513 -
Dere02g0421 572 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Dere02g0421 572 FunFam Pectinesterase 38 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0421 Dere-ChrDere02 4201274 4203080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0421 1 569 Carbohydrate Esterase AT2G47030 38.550 4.34e-134 401