Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0420 ATGAACGGAAAAGTGATTGTCCCCGCTGTTTCTATCATCCTTGTGATAGGCGTGGCCCTTGGCGTCGTCGGCGTCGTCCACTTCAAAAATAAAGACAGCAGCGATGGTGAGGGTCAGGTGAACACCCACACAAAGGCCGTCGCGGCTATATGCCAAGGCTCCGACGATCAGAAGTTCTGCCATGAAACCCTCGACCCCGTCAACACCGCCGACCCTAAAGATTACATAAAGGCGGTGGTAGAATCGGGTATGAACTACGCCATCCAGGCCTTCAATTTCACCGATAGGCTGTCAGTAGAGCATGCGAATAGTAGCAGCCCAGGCGTGAAGATGGCTGTTGAAGATTGCAAGGACTTGTTGCAGTTTGCGATGGCCGATCTACAAGCCTCCGGTGTGCTGACTCAGGACAATACTCGAAGCATGGCCGATCGCCAAGCTGACCTCAAGAATTGGTTTGGTGCAGTCATGGCCTACCAGGAATCTTGTCTGGATGGGTTTTCGCCTGACAATGATGGCGAGAAAGCTGTTCAGAGTCAGTTGCAAACAGGTGGCCTCGACAACGTAGGGAAAGTCACAGGGTTGGCGCTCGATGTTGTGTCTGGGATTTCCCAGTTCCTATCAGCTATTGGCTTGGATTTGAATGTGAAACCTGCTGGTCGTCGTCTTCTCAACGAGGTGGATCATGAAGGGTATCCCTCATGGTTCTCCAGTGCTGATCGCAAGCTGATGGCTGATATGAATAGTGGAATTCCAGTTCAACCCAACGTGGTGGTTGCCAAGGACGGAAGCGGCCAGTTCAAGACCGTTAAGGAAGCTATTAACTCATACCCCCCTAATTTCCAAGGTAAATACGTTATTTACGTCAAGGCTGGTGTCTACGATGAGTACATCCTTGTCACCAAGAAGATGCCCAACATTCTTATCTACGGTGATGGCCCTACAAAGACCATTATCACTGGCAACAAGAGCTTCGCCTCCGGCTGGAAGACAATGAAAACTGCCACCTTCTCCACTGTGGCCGACGGTTTCATCGCCAAGTCGATAGCATTCGAGAACACTGCTGGAGCTGAGGGACATCAAGCAGTCGCACTCCGCGTGATGGGCGATCGTTCGGCTTTCTTCGACTGTGCCATACACGGCTACCAAGACACCTTGTACGCTCACGCCAAACGTCAATTCTACCGCAACTGCGAAATCTCGGGAACAGTGGACTTCATCTTTGGTTATGCTAGCACCTTGATCCAAAACTCCAGGATCGTGGTGAGGAAACCTGCGGAGAATCAGCAAAACATCGTGGTAGCCGACGGCACAAAGCAAAAGAACATGCCCACCGGAGTTGTTATTCAGAACTGCCAGATCGTGGCTGACAACGACCTCTTCCCAGACAGGTTGACAGTGAAGTCGTACCTGGCCAGGCCATGGAAGGCATACTCAAAGGCAATCTTCTTGGAAAGTGATATTGGTGACCATATCCAACCAGATGGTTATCTTCCCTGGATGGGGCAATTGTTCCTAGACACCTGCTACTTCGCTGAGTACGGAAACACCGGCCTCGGTGCTGCTGTGGATAAGAGGGTCACGTGGGGTCACGGCCTCCTTACCAGGGAAGAAGCTGCTCAGTACACCGCTGAGCAGTGGATTCAGGCAAGCACTTGGTTGCCTGAGACCGGCATTCCTTTCAACAGCGGCTTTATCAGAGCATGA 1704 0.5158 MNGKVIVPAVSIILVIGVALGVVGVVHFKNKDSSDGEGQVNTHTKAVAAICQGSDDQKFCHETLDPVNTADPKDYIKAVVESGMNYAIQAFNFTDRLSVEHANSSSPGVKMAVEDCKDLLQFAMADLQASGVLTQDNTRSMADRQADLKNWFGAVMAYQESCLDGFSPDNDGEKAVQSQLQTGGLDNVGKVTGLALDVVSGISQFLSAIGLDLNVKPAGRRLLNEVDHEGYPSWFSSADRKLMADMNSGIPVQPNVVVAKDGSGQFKTVKEAINSYPPNFQGKYVIYVKAGVYDEYILVTKKMPNILIYGDGPTKTIITGNKSFASGWKTMKTATFSTVADGFIAKSIAFENTAGAEGHQAVALRVMGDRSAFFDCAIHGYQDTLYAHAKRQFYRNCEISGTVDFIFGYASTLIQNSRIVVRKPAENQQNIVVADGTKQKNMPTGVVIQNCQIVADNDLFPDRLTVKSYLARPWKAYSKAIFLESDIGDHIQPDGYLPWMGQLFLDTCYFAEYGNTGLGAAVDKRVTWGHGLLTREEAAQYTAEQWIQASTWLPETGIPFNSGFIRA 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0420 567 Pfam Plant invertase/pectin methylesterase inhibitor 46 196 IPR006501 GO:0004857
Dere02g0420 567 NCBIfam pectinesterase inhibitor domain 36 171 IPR006501 GO:0004857
Dere02g0420 567 FunFam Pectinesterase 250 564 - -
Dere02g0420 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 203 IPR035513 -
Dere02g0420 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 199 IPR035513 -
Dere02g0420 567 Pfam Pectinesterase 255 549 IPR000070 GO:0030599|GO:0042545
Dere02g0420 567 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Dere02g0420 567 SMART PMEI_2 42 198 IPR006501 GO:0004857
Dere02g0420 567 CDD PMEI-like_3 49 203 - -
Dere02g0420 567 PANTHER PECTINESTERASE 18 554 - -
Dere02g0420 567 Gene3D - 250 564 IPR012334 -
Dere02g0420 567 SUPERFAMILY Pectin lyase-like 250 562 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0420 Dere-ChrDere02 4196237 4198026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0420 1 564 Carbohydrate Esterase AT2G47030 39.333 4.95e-144 427