Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0417 ATGCTTGCATTTCAAGCTATAACGAAGCGCATATTATGTGTTGTGGAGTACAGAAGGCGGGGAGCTGACATGGGTGAGAATGGCCTGGATGGCGATGCGAATGAGCATGATACGGCAACCACATCAGAGAATCATGCAGAAACCAGCACAAACGAGGAAAAGAGAGAGAATACCAAACAAAAAGAAAAAGCAGACACTGTGCCATTTTACAAGCTGTTCTCATTTGCGGATTCCACTGATACTCTGTTAATGATCGTTGGCACCGTTGGGGCCATTGGAAATGGTATGGGTTTGCCTCTCATGACATTGCTGATGGGCCAAATGATTGATACCTTTGGAAGCAACCAGAATAACGTCAACATCGTTGATCTAGTTTCCAAGGTCTCTTTGAAATTTGTGTACTTGGCAGTAGGATCTGGTGTGGCAGCAAGTCTTCAGGTGTCTTGCTGGATGGTCACAGGGGAGAGACAGGCTGCTCGAATAAGGGGTATGTATTTGAAAACCATACTAAGACAAGATGTTGCTTTCTTTGACATGGAAACAAACACTGGAGAGGTGGTGGGGAGAATGTCTGGTGACACTGTTCTCATACAAGATGCCATGGGAGAGAAGGTTGGGAAATTTCTGCAGCTAGTATCAACATTCATTGGTGGCTTTATAATAGCATTTGTCAAAGGATGGCTTCTTGCCCTTGTTATGTTGTCCATTCTTCCACTTCTTGTGGTGGCTGGGGGATCTATGGCCATGATTATAGGAAGGATGGCAACCCGTGGTCAAAGCGCTTATGCAAAAGCTGCAAATGTTGTTGAACAGACTATTGGCTCTATTAGAACAGTTGCATCCTTCACTGGCGAAAAGCAAGCAGTATCTAGTTACAGCAATTTCCTCGTAGATGCTTACAAATCAGGAGTCCATGAAGGTTTTGTTGCCGGAATGGGTTTCGGCGCAGTTATGTTTGTCTTCTTTTGTGGTTATGCTTTGGCTGTATGGTTTGGCGCAAAGTTGATATTAGAAAAAGGATATACCGGAGGCATTGTGATTAATGTGATTGTTGCGATATTAACTGCTTCGATGTCTCTTGGGCAGGCAACCCCTTGCATGAGTGCTTTTGCTGCAGGTCAAGCTGCAGCATATAAAATGTTTCAAACTATTGAAAGGAAGCCAGAGATAGATGCTTATGATCCAAATGGTAAAATTCTAGAGGATATTAATGGTGAAATACAGTTGAGGGATGTTTATTTTAGTTATCCAGCCAGACCTGAGGAGTTAATATTCAACGGGTTCTCTCTTCATATACGAAGTGGCATCACTGCAGCCTTGGTTGGGGAGAGTGGAAGTGGAAAGTCCACAGTTATCAGTTTGATAGAACGATTCTACGATCCACAGGCAGGTGAAGTTCTTATTGATGGCATCAATCTGAAAGAATTTCAGCTTAGATGGATTAGAGGAAAAATTGGCCTTGTCAGCCAGGAGCCTGTGTTGTTTGCATCTAGCATTAAGGATAACATTGTATATGGAAAGGAGGGAGCAACAATTGAAGAGATGAGAGCTGCAGCTGAACTTGCAAATGCTGCTAAGTTCATCGATAAATTGCCACAGGGATATGACACAATGGTTGGTGAGCATGGAACTCAACTATCCGGTGGACAGAAGCAGCGTATTGCCATTGCAAGAGCAATTTTGAAAGATCCAAGGATCCTACTTCTAGATGAAGCTACAAGTGCACTAGATGCAGAATCTGAAAGGATAGTTCAAGAGGCTCTGGATAGGATCATGGTCAATCGAACTACTGTTATTGTGGCACATCGCTTGAGCACAGTCAGGAATGCTGATATGATTTCTGTGATTCACAGAGGGAAGATGGTTGAACAAGGAACGCACTCAGAGCTGCTCAATGATCCCGATGGAGCTTACTCTCAACTTATACGCTTGCAAGAAGTAAACAAGGAGTCAGAAGATACTACAGAAAATCAAAACAAAAGTGAACTTTCCCTGGAATCTTTAAGACAGTCAAGTCAAACGAGGTCACTTCGAAGATCTTTAAGTCGAGGATCATCAGTGGGGAATAGTAGCCGCCACTCGTTTTCAGTACCATTTGGTTTACCCACAGTTGTTAACGTCCCAGAACCTGGACATGAAAAATTAGAAGACAAAGAACAATTACCAGAGGTTCCACTCCGTCGCCTTGCTTACCTCAACAAGCCAGAGATTCCAGTGCTTCTGCTTGGATGTGTGGCTGCCATAATAAATGGTACAATACTTCCAGTGTTTGGTTTGTTGGTTTCCTCCGTTATCAAAACATTCTATGAGCCACCTCATGAGATGAAAAAGGATTCCAAATTTTGGGCACTAATTTTTATGGCCCTGGGTATTGCATCTTTGGTCGCAATGCCATCCCGAGGATATTTATTTTCTGTGGCTGGCTATAAGTTAATCCAACGTATCAGACTAATATGTTTTGAGAAGGTTGTGAACATGGAGGTTGGTTGGTTTGATGAGCCTGAGCATTCAAGTGGAGTAATAGGTGCAAGGCTCTCGGCAGATGCTTCAACAGTTCGAGCCCTCGTTGGTGATGCGCTAGGCCTATTGGTTCAAAATATAGCATCATTGTTGGCAGGTTTAATTATTGCTTTCGTTGCGAGCTGGCAGTTAGCTTTAATTATTCTAGTTTTGATTCCCTTGATTGGGGTAAATGGATATATTCAAATAAAATTCATGAAGGGATTCAGTGCAGATGCAAAGATGATGTACGAAGAAGCAAGCCAAGTAGCTAATGATGCAGTTGGAAGCATTAGAACAGTAGCTTCTTTCTGTGCTGAAGAGAAGGTAATGGAACTGTACCGGAAGAAATGTGAAGGCCCCATGCAATCTGGCATACGGCAAGGCTTGATCAGTGGAATAGGATTTGGGTGTGCGTTTTTCCTACTCTATAGCGTCTACGCAACAAGTTTCTACGCCGGAGCTAGACTTGTGGATGCTGGCAAATCTTCATTCTCAGATGTTTTTCGGGTTTTCTTTGCTTTAACAATGGCAGCAATGGCAGTTTCCCAATCGAGCTCTATGGCTCCAGACTCTAGCAAAGCCAAGTCAGCTACTGCTTCCATATTTGCACTAATTGATAGGAAGTCGAAGATAGATTCGAGTGACGAGTCTGGTACCACGTTGGATAACGTAAAGGGAGAAATTGAGCTTCGTCATGTGAGCTTCAAGTATCCTTCTCGACCAGATATACCAATTTTCCGAGACCTCAACTTGGCTATTCATTCGGGCAAGACAGTGGCCCTTGTTGGTGAGAGTGGAAGTGGGAAATCCACAGTGATTGCATTGCTACAAAGATTTTATGATCCTGATTCAGGTCAAATTACACTTGATGGAATAGAAATACAGATGTTGCAGATCAAGTGGTTAAGGCAGCAGATGGGGCTGGTGAGCCAAGAGCCAGTACTATTCAATGATACTATACGTGCCAATATTGCCTACGGAAAGGGAGGCGATGCAACCGAAGCGGAAATCATAGCAGCAGCAGAACTGGCCAATGCCCATAAATTTATTAGTGCCTTACAACAGGGATATGATACAGTAGTGGGAGAGAGGGGACTCCAATTATCAGGCGGGCAGAAACAAAGGGTAGCTATTGCACGTGCTATAATTAAAAGTCCAAAGATACTGCTGCTAGATGAGGCCACCAGCGCACTAGACGCAGAGTCAGAGCGAGTGGTTCAAGATGCATTAGACAAAGTGATGGTGAATAGAACTACTGTGGTTGTGGCACATCGTCTATCCACTATAAAGAATGCAGATGTGATTGCGGTGGTAAAAAATGGTGTTATAGTAGAGAAAGGCAAGCATGAGACGTTGATTAACATCCAAGACGGATTTTACGCGTCTTTAGTCCAACTTCATACAAGTGCTTCAACTGTATGA 3924 0.4337 MLAFQAITKRILCVVEYRRRGADMGENGLDGDANEHDTATTSENHAETSTNEEKRENTKQKEKADTVPFYKLFSFADSTDTLLMIVGTVGAIGNGMGLPLMTLLMGQMIDTFGSNQNNVNIVDLVSKVSLKFVYLAVGSGVAASLQVSCWMVTGERQAARIRGMYLKTILRQDVAFFDMETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLVSTFIGGFIIAFVKGWLLALVMLSILPLLVVAGGSMAMIIGRMATRGQSAYAKAANVVEQTIGSIRTVASFTGEKQAVSSYSNFLVDAYKSGVHEGFVAGMGFGAVMFVFFCGYALAVWFGAKLILEKGYTGGIVINVIVAILTASMSLGQATPCMSAFAAGQAAAYKMFQTIERKPEIDAYDPNGKILEDINGEIQLRDVYFSYPARPEELIFNGFSLHIRSGITAALVGESGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFASSIKDNIVYGKEGATIEEMRAAAELANAAKFIDKLPQGYDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTVRNADMISVIHRGKMVEQGTHSELLNDPDGAYSQLIRLQEVNKESEDTTENQNKSELSLESLRQSSQTRSLRRSLSRGSSVGNSSRHSFSVPFGLPTVVNVPEPGHEKLEDKEQLPEVPLRRLAYLNKPEIPVLLLGCVAAIINGTILPVFGLLVSSVIKTFYEPPHEMKKDSKFWALIFMALGIASLVAMPSRGYLFSVAGYKLIQRIRLICFEKVVNMEVGWFDEPEHSSGVIGARLSADASTVRALVGDALGLLVQNIASLLAGLIIAFVASWQLALIILVLIPLIGVNGYIQIKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEEKVMELYRKKCEGPMQSGIRQGLISGIGFGCAFFLLYSVYATSFYAGARLVDAGKSSFSDVFRVFFALTMAAMAVSQSSSMAPDSSKAKSATASIFALIDRKSKIDSSDESGTTLDNVKGEIELRHVSFKYPSRPDIPIFRDLNLAIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGQITLDGIEIQMLQIKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISALQQGYDTVVGERGLQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGKHETLINIQDGFYASLVQLHTSASTV 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0417 1307 PANTHER ABC TRANSPORTER B FAMILY 45 647 IPR039421 -
Dere02g0417 1307 Pfam ABC transporter transmembrane region 84 358 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere02g0417 1307 Pfam ABC transporter transmembrane region 740 1013 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere02g0417 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1052 1300 IPR027417 -
Dere02g0417 1307 ProSitePatterns ABC transporters family signature. 1202 1216 IPR017871 GO:0005524|GO:0016887
Dere02g0417 1307 SUPERFAMILY ABC transporter transmembrane region 71 391 IPR036640 GO:0005524|GO:0016020
Dere02g0417 1307 SUPERFAMILY ABC transporter transmembrane region 722 1042 IPR036640 GO:0005524|GO:0016020
Dere02g0417 1307 Pfam ABC transporter 426 574 IPR003439 GO:0005524
Dere02g0417 1307 FunFam ABC transporter B family member 1 1052 1302 - -
Dere02g0417 1307 CDD ABC_MTABC3_MDL1_MDL2 407 645 - -
Dere02g0417 1307 MobiDBLite consensus disorder prediction 647 694 - -
Dere02g0417 1307 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 85 372 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere02g0417 1307 FunFam ABC transporter B family member 9 71 403 - -
Dere02g0417 1307 SMART AAA_5 1089 1282 IPR003593 GO:0016887
Dere02g0417 1307 SMART AAA_5 434 626 IPR003593 GO:0016887
Dere02g0417 1307 MobiDBLite consensus disorder prediction 24 62 - -
Dere02g0417 1307 Gene3D - 1052 1306 IPR027417 -
Dere02g0417 1307 CDD ABC_MTABC3_MDL1_MDL2 1062 1300 - -
Dere02g0417 1307 Gene3D - 405 658 IPR027417 -
Dere02g0417 1307 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1062 1299 IPR003439 GO:0005524
Dere02g0417 1307 MobiDBLite consensus disorder prediction 660 694 - -
Dere02g0417 1307 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 741 1027 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere02g0417 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 645 IPR027417 -
Dere02g0417 1307 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 407 643 IPR003439 GO:0005524
Dere02g0417 1307 Pfam ABC transporter 1081 1230 IPR003439 GO:0005524
Dere02g0417 1307 FunFam ABC transporter B family member 9 1029 1051 - -
Dere02g0417 1307 Gene3D ABC transporter type 1, transmembrane domain 130 1036 IPR036640 GO:0005524|GO:0016020
Dere02g0417 1307 FunFam ABC transporter B family member 1 720 1028 - -
Dere02g0417 1307 ProSitePatterns ABC transporters family signature. 546 560 IPR017871 GO:0005524|GO:0016887
Dere02g0417 1307 CDD ABC_6TM_Pgp_ABCB1_D2_like 730 1045 - -
Dere02g0417 1307 FunFam ABC transporter B family member 1 397 646 - -
Dere02g0417 1307 CDD ABC_6TM_Pgp_ABCB1_D1_like 84 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0417 Dere-ChrDere02 4174898 4181106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0417 60 1301 Calmodulin-binding Proteins AT2G36910 46.203 0.0 1086