Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0412 ATGGACAAAGACTCTAGTTCATCCTCGTTATCAATCAGCAGCAGCAGCAACCGCCCAGATTTCTCAAGCGCATCTTCTCTCAAACACCTTCCAACAGATCTTAGACTTGGACTAAGCATTTTACCAACTGATCCACATCTTCACTCTTCTATTTCAAGGAGGAAACCTTCAGATAATTGGCCACTGTTAAGCAGTTCACATGCAGCAGAAGTAAACGATTGCAGCTTCTATGTTAAGGTGTACATGGAAGGGGTTCCAATAGGCAGAAAACTCGATCTATTAGCTCATGATGGCTACCATGAGTTAATAAGGACGCTTGAGCGCATGTTTGACACCACCATTCTCTTGGGCACTGAGATGGAGGGAGTACTGCAACCAGAGAGATGGCCTGTGCTAACTTATGAAGATGAAGAAGGGGACTTGATCATGGTTGGGGATGTCCCATGGGAGTTGTTCTTGTCCACTGTCAAGAGACTGTGGATCACCAGGGTAGACGCATTCGGGTGGTAA 510 0.4588 MDKDSSSSSLSISSSSNRPDFSSASSLKHLPTDLRLGLSILPTDPHLHSSISRRKPSDNWPLLSSSHAAEVNDCSFYVKVYMEGVPIGRKLDLLAHDGYHELIRTLERMFDTTILLGTEMEGVLQPERWPVLTYEDEEGDLIMVGDVPWELFLSTVKRLWITRVDAFGW 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0412 169 ProSiteProfiles PB1 domain profile. 75 164 IPR000270 GO:0005515
Dere02g0412 169 Pfam AUX/IAA family 72 163 IPR033389 -
Dere02g0412 169 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 59 163 IPR003311 GO:0005634|GO:0006355
Dere02g0412 169 SUPERFAMILY CAD & PB1 domains 65 160 - -
Dere02g0412 169 MobiDBLite consensus disorder prediction 1 25 - -
Dere02g0412 169 Gene3D - 69 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0412 Dere-ChrDere02 4131197 4132043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0412 78 161 B3 DNA Binding Superfamily AT4G23980 41.667 8.61e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere02g0412 AUX_IAA 3.3e-27 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3573 01 50074801 50075606 Dere02g0412 02 4131197 4132043 CCT
Dere02g0412 02 4131197 4132043 Dere02g0412 02 4131197 4132043 ECH