Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0408 ATGGCAGACAAGAAGATTGACTCAGTCCGCCCACGAATCACAAGCAGCTCCTCCCATCTAGCTTCTGTGTACGGCAACGACTTTGTTGAGCTGGTATGGCAAAATGGCCCAATTCTAGTGCAAGGAGGGTCGCAAAGTGGAACACGAAAGAGACCCTCGTGCATTAGTTATTCTATAAACCCCTCCCGTAAAGCCTTTGATGAAGATCCCAGCATCACAAAACGGGCAAGGTTAAACACTTTTTACTCGATGCTGGACTCATCCCATCAAAATTCCCAACCAACCAATGACCAATGTTCCTATCCGTTTGATTTGAAATACCCCAAAAGCAGTGGTTTAAGTAATAAGCTTGGAGAAGAATTCTCAAATTTAAGAGCCCAAAAAGAATCTAATTTTAAGCCCACTGAGGGGATTACTCAATTATCCTCATCCTCCTCGCAGTCACAGAAGCATGACTTGGGATCTGATCAAAGAGCTGGAAAGTTGAATTTCTCCAACTTCCTGAGACCTGCACTGTTTTTCAAATCTACTTACCAGGGAAAAAGTGCAACCCAGCACACAAGAGTGGAGGAGTTCAAAGCAGCTGTTGGTGGTGGTAGCAAAGCTCCTGATCATTCCGTAGTGATTGACTCAGCAAAGGGATCTCATAGTCTGAATGGAATTCATCATGACCAAACAGATTTACCTTCCAACAAAGCAAAACCGACACCCTTTGTTGTAAAATGCGATCGGGTAGCACTCCCTGACGACGAGCACTCTGAAGCTGTTGGACACGATAGTGCCCTTAAGACTCAGGGATCAAATGGTCAATATCATAGTCAAACACATAGATCAAAAAGAGTATCATCCTCTTCTTTGTGCTCGCTGGGAGCCTCAAATGACCCTACCTTCCATAGTAGAAAACACGAGGACACCGACGACTCAACCTATGTAAGTGATAATGAAGAAACAGAAGATGTTATAAAGGAAACGCCTATTCGGGAGGGTTCTAGAGGCAAGGGAAGCAGGAACGCGGAGATCCATAATTTATCGGAGAGGAAGCGAAGAGATACGATTAACAAGAAGATGCGTGCATTAAAACAGCTCATACCCAATTGCAACAAGATGGACAAGGCTTCAATGCTTGACGATGCCATCGATTACCTTAAGACCCTCAAGCTTCAGTTACAGGTTATGTCAATGGGAAGTGGATTTTGTATGCCTCTAATGATGTTACCTGGGAGTGGTGGAGGGCATCAATTGCAACTACCTCATCAGCTAATGAGTATGAGGCCAGGCATAGGCATCCCTTGCAGCCTACCTCCCCAGTTCTCTAATATTAATATTCCACAACTACTTCCTTCTCATCCTCAGCCTCAGCCTCATCCCATCTCCCCCAATACACTTCAAATGCTTGGTTTCCCCAATCAGATGCTGCCCATCCAATTCCCAGTGTCCTATCCACCTTTCATGTCTATGCCTCCCAAGCCTATACAACCCAACCTCTCTGCCCACTTAACCACTCTCGATGACCCTGATCTCAATGCACAGCTCGCTTCTACTATGCAAGCAACTAATCAGGGAACAAAATGA 1572 0.451 MADKKIDSVRPRITSSSSHLASVYGNDFVELVWQNGPILVQGGSQSGTRKRPSCISYSINPSRKAFDEDPSITKRARLNTFYSMLDSSHQNSQPTNDQCSYPFDLKYPKSSGLSNKLGEEFSNLRAQKESNFKPTEGITQLSSSSSQSQKHDLGSDQRAGKLNFSNFLRPALFFKSTYQGKSATQHTRVEEFKAAVGGGSKAPDHSVVIDSAKGSHSLNGIHHDQTDLPSNKAKPTPFVVKCDRVALPDDEHSEAVGHDSALKTQGSNGQYHSQTHRSKRVSSSSLCSLGASNDPTFHSRKHEDTDDSTYVSDNEETEDVIKETPIREGSRGKGSRNAEIHNLSERKRRDTINKKMRALKQLIPNCNKMDKASMLDDAIDYLKTLKLQLQVMSMGSGFCMPLMMLPGSGGGHQLQLPHQLMSMRPGIGIPCSLPPQFSNINIPQLLPSHPQPQPHPISPNTLQMLGFPNQMLPIQFPVSYPPFMSMPPKPIQPNLSAHLTTLDDPDLNAQLASTMQATNQGTK 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0408 523 Pfam Helix-loop-helix DNA-binding domain 341 385 IPR011598 GO:0046983
Dere02g0408 523 MobiDBLite consensus disorder prediction 252 348 - -
Dere02g0408 523 MobiDBLite consensus disorder prediction 125 153 - -
Dere02g0408 523 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
Dere02g0408 523 MobiDBLite consensus disorder prediction 260 295 - -
Dere02g0408 523 MobiDBLite consensus disorder prediction 315 348 - -
Dere02g0408 523 FunFam Basic helix-loop-helix transcription factor 331 394 - -
Dere02g0408 523 PANTHER TRANSCRIPTION FACTOR PIF3 1 516 IPR044273 GO:0003700|GO:0006355
Dere02g0408 523 Gene3D - 332 394 IPR036638 GO:0046983
Dere02g0408 523 SMART finulus 342 391 IPR011598 GO:0046983
Dere02g0408 523 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 334 396 IPR036638 GO:0046983
Dere02g0408 523 CDD bHLH_AtPIF_like 336 398 IPR047265 -
Dere02g0408 523 MobiDBLite consensus disorder prediction 125 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0408 Dere-ChrDere02 4088726 4091999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0408 162 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 38.550 1.07e-33 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere02g0408 HLH 6e-12 No_clan