Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0406 ATGGGAAGGCACTCTTGCTGTTACAAGCAGAAGCTTCGGAAGGGTCTATGGTCCCCCGAGGAGGACGAAAAACTTTTGAGACATATTACCAAGTATGGCCATGGCTGCTGGAGCTCTGTTCCAAAGCAAGCAGGTCTGCAGAGGTGTGGTAAGAGCTGTAGGCTGAGGTGGATCAATTATTTGAGGCCTGATTTGAAGAGAGGTACATTCTCACAAGAAGAAGAAAATCTCATCATTGAACTTCATGCAGTGTTGGGAAATAGATGGTCTCAAATTGCGGCGCAATTGCCTGGAAGAACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCTTAAAGAAGAAACTGAGGCAAAGAGGCATAGACCCCGTCACCCACAAGCCACTCTCCGAGATTGAAAATGGAGATGACAAAGAGAAAGTACCTGCAGTGTCCAGTGAACTGAACCTCCTCAAATCAGAAAGCCCCAATTCAGATGCCACAAAGGCCTATGCACCCGATATGGGAGGCTGTTCCAGCTTCAAGTTTGATCATAACACAAGTAACACCAATATGATTACCAACTGTGGTAGCAAAGAATTGCTCCCAGACAGATTCATGACGAGCTACAACACTTCAGATTTGATGGGGAATTTCGCACTGCAGATGAATTATTCATCCACGGATGATACCCTCTCAACTAGTTCAAACCCTTCCCAATGGTTCATCCAAACAGGAAGACCAATATTTGATATGAACTCTGAATTTGCTTCCAGTTCCATGTCTTGTATTCTTCCTCCCTCAAACACCTCTTATCTTCCTACGGTTGGTGTTCCCTGCGATGATATTTGTACGGCTTCTTACACAGAGAATGCATCCCAATCTCATTTCTGGGGAATGACAGATTGCAGTGCCTCCGCAAAAGAGACCCAAATTCAAGTGATGGAAAGCCAAACAGAGGAAGGCAAGTGGGGTGATTACGCTCCAAACCCAATCTTAATGCTGCCCGTCACTCATTTGGTATCTGATACTTTCGGGGGCATGTTGCCTCATAACAAGCAGCAATATGAAGCCTCACAAACATGTAATATGTTTTCCAAGGACATTCAGAAGCTCACGGCTGCCTTTGAACATATATAG 1119 0.4459 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEIENGDDKEKVPAVSSELNLLKSESPNSDATKAYAPDMGGCSSFKFDHNTSNTNMITNCGSKELLPDRFMTSYNTSDLMGNFALQMNYSSTDDTLSTSSNPSQWFIQTGRPIFDMNSEFASSSMSCILPPSNTSYLPTVGVPCDDICTASYTENASQSHFWGMTDCSASAKETQIQVMESQTEEGKWGDYAPNPILMLPVTHLVSDTFGGMLPHNKQQYEASQTCNMFSKDIQKLTAAFEHI 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0406 372 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere02g0406 372 FunFam Myb transcription factor 11 67 - -
Dere02g0406 372 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Dere02g0406 372 SMART sant 13 63 IPR001005 -
Dere02g0406 372 SMART sant 66 114 IPR001005 -
Dere02g0406 372 Gene3D - 69 141 - -
Dere02g0406 372 FunFam MYB transcription factor 68 140 - -
Dere02g0406 372 CDD SANT 17 61 IPR001005 -
Dere02g0406 372 Gene3D - 11 67 - -
Dere02g0406 372 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere02g0406 372 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dere02g0406 372 CDD SANT 69 109 IPR001005 -
Dere02g0406 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dere02g0406 372 PANTHER MYB DOMAIN PROTEIN 55 1 286 - -
Dere02g0406 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dere02g0406 372 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0406 Dere-ChrDere02 4071155 4072466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0406 1 255 MYB Transcription Factor Family AT4G01680 59.608 2.34e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere02g0406 Myb_DNA-binding 1.7e-14 CL0123