Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0388 ATGTCTTCTGTAATAGGTGTATCGTCTATATACCAGACTCCGTCTCTGGAACTATATAGAAGGGCTACAACAACAACGGGTGCTACCACCTCCATTTCGTTGCAATTGTCGGACAACAGGTCCCACTTTAACAACGTTCTGAGAGCTCACCTCAGTAACAACGGTAGTGGCAACTTAAAGAGCGGTTTGAAACCCAGAGTTAGTTTTGTCCCTTCTTCCATTGCCACGCCCAATTCTTCCGTTCTAAGTGAAGAAGCATTCAAGGGTATAGGTCGTGGCTTCTCCGACAAAGACCCTTTGGATGATGTTATTCAAAACCAGGACTATGCCTATGACCCTGAAACTGAGGCCTCTTACGCTGCTGACAACGAGGAGGAGCTCGACATTTCCAAGCTGGGCTTGCCTTCGCGCCTCGTGGATTCACTCCAGAAACGTGGGATTACTCATCTTTTCCCCATCCAGAGAGCTGTTTTACTACCGGCCCTTGAAGGTCGAGATCTTATTGCTCGAGCAAAGACTGGGACTGGGAAGACATTAGCATTTGGGATTCCAATTATTAAAGGGCTCAGTGACGATGAACAGAGAACCTCTCAGAGACGATCTGGTCGACTTCCCAAAGTATTGGTCCTTGCACCTACCAGGGAATTAGCAAAGCAAGTGGAGAAAGAGATAAAAGAATCTGCACCCTATTTGAGCACAGTTTGTGTTTATGGGGGCGTCTCTTATGTTACACAACAAAATGCACTTTCTCGTGGTGTTGATGTAGTGGTTGGAACACCTGGTAGAATTATCGACCTAATAAATGGGAACAGCCTTAAATTAAGTGAAGTTAAGTATTTGGTCCTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTAATTTTAGAAAAGCTACCATCTGAACGGCAGAGCATGCTTTTTTCTGCAACCATGCCAGGATGGGTGAAGAAACTGGCAAGAAAATATCTGGACAATCCCTTAACAATTGATTTGGTTGGTGAAGAAGAGGAAAAGCTTGCAGAAGGGATCAAACTTCATGCCATATCAGCCACTGCCACTTCAAAGAGGACAATGCTTTCTGATCTTATAACAGTTTATGCAAAGGGTGGAAAGACTATTGTTTTTACTCAGACTAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGCATACCTTCTGAGGCGCTGCATGGAGATATATCCCAGCACCAGAGAGAGAGAACATTGAATGGTTTTAGACAAGGGAAATTCACTGTACTTGTTGCCACTGATGTTGCGGCTCGTGGACTTGATATTCCTAATGTTGATTTGGTTATTCACTATGAACTTCCCAATGACCCTGAGACTTTTGTACATCGCTCTGGTCGTACTGGGCGTGCTGGAAAGGAAGGTACTGCCATTCTGATGTACACCAGTAGCCAGAGGAGAACTGTTAGATCTCTTGAGCGTGATGTAGGCTGTAAATTTGAATTTATTAGTCCACCAGCTATACAAGATGTTTTGGGGTCTTCTGCGGAGCAAGTAGTTGCCACACTTAATAGAGTTCATCCTGAATCAGTTGAGTTTTTCACCCCAACTGCTCAAAAACTGATTGAGGAACAAGGAACAAGTGCCCTTGCTGCTGCATTAGCACATCTAAGTGGATTTTCATGTCCTCCCTCATCCCGGTCTCTTATTAACCACGAGCAGGGATGGGTTACCTTACAACTGACTCGAGATCAAGATGATTCTAGAAGATTTTTGTCTGCAAGATCAGTCACTGGTTTTCTTTCTGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATATAATTGCAGATGAAAGGGTTCAAGGAGCTGTTTTCGATCTTCCAGAGGAGATTGCTAAAGAGTTACTGAATAAGGAATTGCCAGCTGGAAACAGTATTTCTAAGATCACCAAGTTGCCTCCTCTGCAAGATGATGGGCCTCCTAGTGATTTCTATGGGAAGTTTTCTGACAGAGATCGAAGTAACCGTAGAGGTTCCAGGGATCGTAAAGGTTTTAGATCCTCACGGGGATGGGAAGGAGGCCGAGACTCTGATGATGAATTTGGTGATTCATATAGGAGAGGTGGTCGAAGTTTTAGAACTGGCAATAGCTGGTCTCAGAGGGCAAGAAGCAGTGGAGACTTTGATGAATTTGGTGATTCGAATAGGAGAGGTGGTCGAAGTTTTAGAACTGGCAATAGCTGGTCTCAAAAGGCAAGAAGCAGTGAGGATGATTGGCTAATTGGAGGTAGAAGATCGAGCAGGTCTTCATCATCAGACAGAGGCTTTGGAGGGTCCTGTTTTAATTGTGGGCAGTCTGGACATCGGGCATCTGATTGTCCCAACAAACTAGGCTTTTAA 2400 0.4417 MSSVIGVSSIYQTPSLELYRRATTTTGATTSISLQLSDNRSHFNNVLRAHLSNNGSGNLKSGLKPRVSFVPSSIATPNSSVLSEEAFKGIGRGFSDKDPLDDVIQNQDYAYDPETEASYAADNEEELDISKLGLPSRLVDSLQKRGITHLFPIQRAVLLPALEGRDLIARAKTGTGKTLAFGIPIIKGLSDDEQRTSQRRSGRLPKVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGNSLKLSEVKYLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPGWVKKLARKYLDNPLTIDLVGEEEEKLAEGIKLHAISATATSKRTMLSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSIPSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLERDVGCKFEFISPPAIQDVLGSSAEQVVATLNRVHPESVEFFTPTAQKLIEEQGTSALAAALAHLSGFSCPPSSRSLINHEQGWVTLQLTRDQDDSRRFLSARSVTGFLSDVYSPAADEVGKIHIIADERVQGAVFDLPEEIAKELLNKELPAGNSISKITKLPPLQDDGPPSDFYGKFSDRDRSNRRGSRDRKGFRSSRGWEGGRDSDDEFGDSYRRGGRSFRTGNSWSQRARSSGDFDEFGDSNRRGGRSFRTGNSWSQKARSSEDDWLIGGRRSSRSSSSDRGFGGSCFNCGQSGHRASDCPNKLGF 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0388 799 MobiDBLite consensus disorder prediction 664 707 - -
Dere02g0388 799 CDD GUCT_Hera 563 643 - -
Dere02g0388 799 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 158 335 IPR014001 -
Dere02g0388 799 SMART c2hcfinal6 779 795 IPR001878 GO:0003676|GO:0008270
Dere02g0388 799 MobiDBLite consensus disorder prediction 764 789 - -
Dere02g0388 799 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 106 697 - -
Dere02g0388 799 Pfam GUCT (NUC152) domain 556 656 IPR012562 GO:0003723|GO:0004386|GO:0005524
Dere02g0388 799 CDD SF2_C_DEAD 349 478 - -
Dere02g0388 799 Gene3D - 128 339 IPR027417 -
Dere02g0388 799 Gene3D - 763 798 - -
Dere02g0388 799 ProSiteProfiles Zinc finger CCHC-type profile. 780 795 IPR001878 GO:0003676|GO:0008270
Dere02g0388 799 MobiDBLite consensus disorder prediction 739 754 - -
Dere02g0388 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 490 IPR027417 -
Dere02g0388 799 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 364 509 IPR001650 -
Dere02g0388 799 Pfam DEAD/DEAH box helicase 151 324 IPR011545 GO:0003676|GO:0005524
Dere02g0388 799 MobiDBLite consensus disorder prediction 710 724 - -
Dere02g0388 799 Pfam Zinc knuckle 779 795 IPR001878 GO:0003676|GO:0008270
Dere02g0388 799 SUPERFAMILY Retrovirus zinc finger-like domains 766 797 IPR036875 GO:0003676|GO:0008270
Dere02g0388 799 Gene3D - 350 547 IPR027417 -
Dere02g0388 799 FunFam ATP-dependent RNA helicase RhlE 119 338 - -
Dere02g0388 799 MobiDBLite consensus disorder prediction 647 799 - -
Dere02g0388 799 Pfam Helicase conserved C-terminal domain 362 469 IPR001650 -
Dere02g0388 799 SMART ultradead3 146 352 IPR014001 -
Dere02g0388 799 SMART helicmild6 389 469 IPR001650 -
Dere02g0388 799 CDD DEADc 138 336 - -
Dere02g0388 799 FunFam Nucleolar RNA helicase II 357 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0388 Dere-ChrDere02 3850463 3855986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0388 114 509 Eukaryotic Initiation Factors Gene Family AT1G72730 35.961 1.06e-63 217