Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0381 ATGTCTTCCTCAAGGCGTAGCCAATCATCCAGCAATTCAGGAAGATCAAGACATAGTGCTAGGATTATTGCTCAGACCACTTTGGATGCGAAACTACATGCAAATTTTGTTCAGTCCGGTAGTTCCTTTGACTACTCAAGTTCAGTGCGTGTTTCAGGCACCGTTAGTACTGGAGAGCATCAATCAGTTGGTGACCCAGTAACATCAGCTTATCTCCGTCACATACAGAAAGGCCAGCTGATTCAGCCTTTCGGCTGCTTGCTAGCCTTAGATGACAAAACATGCAAGGTCATTGCCTACAGTGAGAATGCAGCTGAAATGCTTACCATGGTTAGTCATGCCGTGCCCAGTGTTGGTGACCACCCTGCTCTTGCCATTGGCACTGACATTAGAAGTATTTTCACCGCCCCAAGTGCTTCTGCCTTGCAGAAGGCAATAGGATTTGGGGAGGTTTCACTTCTTAACCCCATCCTAGTTCATTGCAAGACTTCTGGGAAGCCCTTTTATGCAATTATCCATCGTGTCACTGGTAGTTTGATCATTGACTTTGAGCCAGTCAAGCCTCATGAAGTTCCCATGACTGCAGCAGGCGCCCTCCAATCTTACAAGCTTGCATCCAAAGCAATTGCCCGATTACAATCTTTGCCTAATGGTAGCATGGAAAGGCTCTGTGATATGATGGTTCAGGAGGTTTTTGAACTCACAGGTTATGACAGGGTGATGGCTTATAAATTTCATGAAGATGATCATGGGGAAGTGGTCGCTGAGTTCAAAAAGCCTGGCTTAGAGCCATATATGGGTTTGCATTATCCTGCCACTGATATTCCACAGGCTACACGCTTTTTATTCATGAAGAACAAGGTTCGTATGATAGTTGATTGTCATGCAAAACATGTGAAAGTGCTTCAAGATGAAAATCTTCCATTTGATTTAACCTTTTGTGGTTCAACCTTGAGGGCTCCTCATAGTTGCCACGTGCAGTATATGCAGAACATGAATTTAATTGCATCCCTGGTTATGGCAGTAGTGGTCAATGACAGCGATGAAGATGGAAATAGCTCTGATTCTGTTCAGCCACAGAAGAGAAAGAGACTCTGGGGCTTAGTAGTTTGCCACAACTATACCCCCCGTTTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTGGCTCAAGTATTTGCTATCCATGTTAACAAAGAATTAGAGTTAGAATATCAGATTATTGAGAAGAACATCCTGCGCACCCAGACTCTTCTGTGTGATATGCTGATGCGAGATGCACCTCTAGGTATTATATCACAGAACCCAAATATAATGGATCTTGTGAAATGTGATGGAGCTTGCCTCTTGTATAAAAACATGGTATGGAGATTAGGAGTGACGCCAAGTGAATCCCAGATCCGAGAGATAGCTTTATGGCTGTCAGAGTGCCATAAGGATTCCACAGGTTTGAGTACAGATAGCTTAATTGATGCAGGGTTTCCAGGGGCTGCTGCTCTTGGCGATATGGTATGTGGAATGGCATCTGTGAGAATAGCTTCCAAGTATATGGTTTTCTGGTTTCGGTCACACGTTGCTGCTGAAATCCGATGGGGCGGTGCAAAGCATGAACCTGGTGAAGAGGATGATTATAGGAGGATGCATCCAAGATCATCATTCAAGGCTTTCCTCGAAGTTGTGAAGTCTAGAAGCTTGCCATGGAAAGACTATGAAATGGATGCTATCCACTCCTTGCAGCTCATACTGAGAAATACATTTAAGGAGACAGAGATTATGGATACAACCACAAATGCAATTGACACAAGACTAAGTCATTTGAAAATTGAAGGAATGCAAGAACTGGAAGCAGTGACAAGTGAGATGGTTCGGTTGATTGAAACTGCAACAGTACCGATTTTGGCAGTTGATGTTGATGGGCTGGTCAATGGGTGGAATACAAAAATTGCTGAGTTGACATGTCTTTCAGTCGATAATGCTATTGGAAAGCATTTGCTCACGCTTGTTGAAGATTCTTCTATTGATAGAGTCAAGAAGATGCTGGACATGGCACTGCAAGGTGAAGAAGAGCAGAATGTCCAATTTGAGATCAAAACACATGGGTCTAAGATTGAATCTGGTCCTATCAGCTTAGTAGTTAATGCTTGTGCAAGTAGGGATCTTCGGGATAATGTTGTTGGGGTTTGTTTTGTGGCTCAAGATATAACTGCTCAAAAGACGGTTATGGACAAATTCACCCGAATTGAAGGTGATTACAAGGCAATTGTACAGAGCCCAAACCCATTGATTCCCCCAATATTTGGTACAGATGAATTTGGCTGGTGTTGTGAATGGAATCCAGCTATGACAAAGTTAACTGGATGGAAACGAGAGGAGGTGATGGATAAGATGCTTTTAGGGGAAGTATATGGTACCCAGATGGCTTGTTGTCGTCTCAAGAATCAAGAAGCTTATGTTAATTTTGGTATTGTACTTAATAAAGCGATGACTGGTTTGGAAACGGAGAAGGTTGCTTTTGGTTTCTTTGCTCGGAATGGGAAGTATGTAGAATGCCTGCTTTCTGTGAGTATGAAATTGGACACAGAGGGTGCAATTACTGGGATTTTCTGCTTCCTGCAGCTAGCTAGCCCCGAGCTGCAACAAGCATTGCATATTCAGCGTCTTTCTGAAAAAACTGCTTTGAAGAGACTGAAAACTTTAGCTTATATGAAAAGGCAGATTTGGAATCCTTTATGTGGGATTATGCTCTCTCGCAAAATGCTGGATGGTACTGAATTGGGAACTGAACAAAAACAGCTTCTGCACACTAGTGCTCAGTGTCAGCGCCAGCTCAGCAAAGTCCTTAATGACTCAGATCTTGACAGCATCATTGATGGCTACTTGGATCTGGAGATGGTTGAATTCACTCTGCATGAGGTATTGGTCGCGTCCTTTAGTCAAGTCATGACAAAGAGCAATGCAGAGGGTGTTCAATTAGTGAATGATGTTGAAGATCGTATCAAGGCAGAAATCTTCTATGGTGATAGTCTTAGACTTCAGCAGGTCTTAGCTGACTTCTTATCTATTTCCATCAGTTTTACACCATCTGGAGGTCAGGTTGTTGTGGCAGCCTCTTTAACCCAAGATCAGTTAGGAAAATCTGTCCATCTTGCCAATTTGGAGCTCAGCATAACACATGCTGGTAGTGGGGTGACAGAAGCATTGCTGAACCAGATGTTCAGAAGTGATGGACAAGAATCTGAGGAGGGTGTAAGCCTTCTCATCAGCAGAAAGCTGCTAAAGCTCATGAACGGGGATGTACGTTATCTAAGGGAAGAAGGCAAATCGTCTTTCATCTTATCAGTTGAACTAGCCGCAGCCCACAAGTCGAGGGCTTAA 3378 0.4331 MSSSRRSQSSSNSGRSRHSARIIAQTTLDAKLHANFVQSGSSFDYSSSVRVSGTVSTGEHQSVGDPVTSAYLRHIQKGQLIQPFGCLLALDDKTCKVIAYSENAAEMLTMVSHAVPSVGDHPALAIGTDIRSIFTAPSASALQKAIGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPHEVPMTAAGALQSYKLASKAIARLQSLPNGSMERLCDMMVQEVFELTGYDRVMAYKFHEDDHGEVVAEFKKPGLEPYMGLHYPATDIPQATRFLFMKNKVRMIVDCHAKHVKVLQDENLPFDLTFCGSTLRAPHSCHVQYMQNMNLIASLVMAVVVNDSDEDGNSSDSVQPQKRKRLWGLVVCHNYTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQIIEKNILRTQTLLCDMLMRDAPLGIISQNPNIMDLVKCDGACLLYKNMVWRLGVTPSESQIREIALWLSECHKDSTGLSTDSLIDAGFPGAAALGDMVCGMASVRIASKYMVFWFRSHVAAEIRWGGAKHEPGEEDDYRRMHPRSSFKAFLEVVKSRSLPWKDYEMDAIHSLQLILRNTFKETEIMDTTTNAIDTRLSHLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTCLSVDNAIGKHLLTLVEDSSIDRVKKMLDMALQGEEEQNVQFEIKTHGSKIESGPISLVVNACASRDLRDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQSPNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGEVYGTQMACCRLKNQEAYVNFGIVLNKAMTGLETEKVAFGFFARNGKYVECLLSVSMKLDTEGAITGIFCFLQLASPELQQALHIQRLSEKTALKRLKTLAYMKRQIWNPLCGIMLSRKMLDGTELGTEQKQLLHTSAQCQRQLSKVLNDSDLDSIIDGYLDLEMVEFTLHEVLVASFSQVMTKSNAEGVQLVNDVEDRIKAEIFYGDSLRLQQVLADFLSISISFTPSGGQVVVAASLTQDQLGKSVHLANLELSITHAGSGVTEALLNQMFRSDGQESEEGVSLLISRKLLKLMNGDVRYLREEGKSSFILSVELAAAHKSRA 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0381 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 624 731 IPR035965 -
Dere02g0381 1125 Pfam PAS fold 751 873 IPR013767 GO:0006355
Dere02g0381 1125 Pfam PAS fold 621 735 IPR013767 GO:0006355
Dere02g0381 1125 SUPERFAMILY GAF domain-like 410 588 - -
Dere02g0381 1125 Coils Coil 399 419 - -
Dere02g0381 1125 Gene3D PAS domain 612 748 - -
Dere02g0381 1125 FunFam Phytochrome 407 538 - -
Dere02g0381 1125 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 958 1111 IPR036890 -
Dere02g0381 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 765 871 IPR035965 -
Dere02g0381 1125 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 392 IPR016132 -
Dere02g0381 1125 Gene3D - 407 580 IPR043150 -
Dere02g0381 1125 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1007 1117 IPR003594 -
Dere02g0381 1125 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Dere02g0381 1125 PRINTS Phytochrome signature 733 753 IPR001294 GO:0006355|GO:0009584
Dere02g0381 1125 PRINTS Phytochrome signature 640 655 IPR001294 GO:0006355|GO:0009584
Dere02g0381 1125 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Dere02g0381 1125 PRINTS Phytochrome signature 713 730 IPR001294 GO:0006355|GO:0009584
Dere02g0381 1125 PRINTS Phytochrome signature 432 452 IPR001294 GO:0006355|GO:0009584
Dere02g0381 1125 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Dere02g0381 1125 PRINTS Phytochrome signature 550 568 IPR001294 GO:0006355|GO:0009584
Dere02g0381 1125 PRINTS Phytochrome signature 517 536 IPR001294 GO:0006355|GO:0009584
Dere02g0381 1125 PRINTS Phytochrome signature 621 637 IPR001294 GO:0006355|GO:0009584
Dere02g0381 1125 SMART HKATPase_4 1007 1119 IPR003594 -
Dere02g0381 1125 ProSiteProfiles PAS repeat profile. 618 688 IPR000014 -
Dere02g0381 1125 Pfam Phytochrome region 415 590 IPR013515 GO:0006355|GO:0009584
Dere02g0381 1125 PANTHER TWO-COMPONENT HISTIDINE KINASE 890 1115 - -
Dere02g0381 1125 SMART pas_2 750 819 IPR000014 -
Dere02g0381 1125 SMART pas_2 620 686 IPR000014 -
Dere02g0381 1125 FunFam Phytochrome 614 745 - -
Dere02g0381 1125 SMART HisKA_10 895 960 IPR003661 GO:0000155|GO:0007165
Dere02g0381 1125 SUPERFAMILY GAF domain-like 199 399 - -
Dere02g0381 1125 CDD PAS 629 735 IPR000014 -
Dere02g0381 1125 CDD PAS 762 873 IPR000014 -
Dere02g0381 1125 Gene3D PAS domain 75 322 - -
Dere02g0381 1125 Gene3D - 200 563 IPR029016 -
Dere02g0381 1125 ProSiteProfiles PAS repeat profile. 751 803 IPR000014 -
Dere02g0381 1125 Pfam GAF domain 219 402 IPR003018 GO:0005515
Dere02g0381 1125 Gene3D PAS domain 764 876 - -
Dere02g0381 1125 ProSiteProfiles Histidine kinase domain profile. 902 1121 IPR005467 -
Dere02g0381 1125 SMART gaf_1 219 412 IPR003018 GO:0005515
Dere02g0381 1125 NCBIfam PAS domain S-box protein 625 741 IPR000014 -
Dere02g0381 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Dere02g0381 1125 Pfam PAS fold 70 186 IPR013654 GO:0006355
Dere02g0381 1125 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Dere02g0381 1125 PIRSF Phytochrome_conventional 1 1125 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Dere02g0381 1125 Gene3D - 958 1123 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0381 Dere-ChrDere02 3814536 3819435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0381 1 1122 Histidine Kinase Gene Family AT1G09570 76.759 0.0 1814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3610 01 50380695 50385131 Dere02g0381 02 3814536 3819435 CCT
Dere02g0381 02 3814536 3819435 Dere02g0381 02 3814536 3819435 ECH