Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0379 ATGAAAGATTCTGCGTCTCACGAAATGCTTAACAAAGCAATTGTGATTTGCGATAAGTTTGATGATGATCTTGGTTTAACTAAGCTTTTAGTGGATAATGCCCCCAAAGCCATGAAGGAGCGTGAATTCCGGAGCTATTTTGGCCGCAAGATTGCCATTGACGCCAGTATGAGCATGTACCAGTTCCTTACGGTCGTGGGAAGAAGTGGGACTGAGATGCTCACTAATGAGGCTGGTGAAGTTACTAGATATGTTTTTGATGGGAAGCCACCTGATTTGAAGAAGCACGAGCTGGCAAAACGTGTCTCAAAGAGGGCCGATGCAAATGAGGATTTGTTAGAAGCCGTGGAGGTGACAAGGCAGCATAATGAAGGTTGTAAAAGACTTTTATCACTCATGGGAGTGCCTGTCATTGAGGCACCGTCAGAAGCCGAGGCACAGTGTGTTGCACTTTGCAAATCTGGAAAGGCATTGGCTTCTGAAGACATGGATTCATTAACGTTTGGAGCTCCTAGATTTCTTCGCCATCTAATGGATCCTAGCTCAAAGAAAGTTCCTGTGATGGAATTTGAAGTTGCAAAGATATTGGAGGAGCTAAATCTGACCATGGATCAATTTATTGACTTATGCATTCTTTCTGGGTGTGATTATTGTGGAAGCATTCGAGGGATTGGTGGAAAGACTGCTTTGAAGCTTATTCACCAACATGGCTCTATAGAGATCATATTGGAGAACATAAATAGCAAGAGGTACCAGATACCAGATGATTGGTCATATCAGGAGGCTAGGCAGCTTTTTAAAGAACCAGAAGTCTTGACAGAAGAAAAGGATCTTGAACTTAAGTGGACTGCTCCAGATGAAGAAGGGTTAATTACATTTCTGGCCATAGGAAGAATTAAAGCAGCAAAGAAGAAGTCATCACAAGGCCAACTGGAATCAATTTTTAAGCCGGTGGCTAATTCCTCTGCACCTGTTAAGCGGAAGGCATTTCGTTTGGCAGAGGCTTGTGTATTGTTCATCCGCATTGTAAATTTTCATGCAGTCTCATGTTGGCAAGGTTCAAGCACTGGCACGTTTCGTGCTTTAAATTCACAGCATTTCTTTCTTTGTCAACTTAACTCTTCTCTTTCTTCCAAGTCTTTGTCATCTCGCTGTAACGATTGTTATATATATATATATATACACTAA 1188 0.4192 MKDSASHEMLNKAIVICDKFDDDLGLTKLLVDNAPKAMKEREFRSYFGRKIAIDASMSMYQFLTVVGRSGTEMLTNEAGEVTRYVFDGKPPDLKKHELAKRVSKRADANEDLLEAVEVTRQHNEGCKRLLSLMGVPVIEAPSEAEAQCVALCKSGKALASEDMDSLTFGAPRFLRHLMDPSSKKVPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCGSIRGIGGKTALKLIHQHGSIEIILENINSKRYQIPDDWSYQEARQLFKEPEVLTEEKDLELKWTAPDEEGLITFLAIGRIKAAKKKSSQGQLESIFKPVANSSAPVKRKAFRLAEACVLFIRIVNFHAVSCWQGSSTGTFRALNSQHFFLCQLNSSLSSKSLSSRCNDCYIYIYIH 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0379 395 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 31 318 IPR006084 -
Dere02g0379 395 SUPERFAMILY PIN domain-like 25 216 IPR029060 -
Dere02g0379 395 Gene3D - 205 268 - -
Dere02g0379 395 CDD PIN_FEN1 25 201 - -
Dere02g0379 395 ProSitePatterns XPG protein signature 2. 134 148 IPR019974 GO:0016788
Dere02g0379 395 FunFam Flap endonuclease 1 201 268 - -
Dere02g0379 395 Gene3D - 31 204 - -
Dere02g0379 395 SMART HhH_4 203 236 IPR008918 GO:0003677|GO:0003824
Dere02g0379 395 Pfam XPG N-terminal domain 25 107 IPR006085 GO:0004518
Dere02g0379 395 SMART xpgineu 131 201 IPR006086 GO:0004518
Dere02g0379 395 Pfam XPG I-region 134 216 IPR006086 GO:0004518
Dere02g0379 395 SMART xpgn3 25 108 IPR006085 GO:0004518
Dere02g0379 395 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 206 221 IPR006084 -
Dere02g0379 395 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 48 62 IPR006084 -
Dere02g0379 395 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 130 147 IPR006084 -
Dere02g0379 395 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 201 320 IPR036279 -
Dere02g0379 395 CDD H3TH_FEN1-Euk 204 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0379 Dere-ChrDere02 3804137 3811327 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0379 25 331 Core DNA Replication Machinery Family AT5G26680 67.039 4.57e-170 480
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0379 02 3804137 3811327 Dere02g0379 02 3804137 3811327 ECH