LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere02g0376	ATGGGAAGGCACTCTTGCTGTTACAAGCAGAAGCTAAGGAAAGGCCTCTGGTCACCAGAGGAGGACGAGAAGCTTCTCAATTACATCACAAAGCATGGCCATGGATGTTGGAGCTCTGTCCCCAAACTAGCTGGTTTGCAGAGATGCGGAAAGAGCTGCAGATTGAGGTGGATAAATTACCTTAGGCCTGATTTGAAGAGAGGAGCATTCTCCCAACTGGAAGAGAATTTGATTATTGAGCTTCATGCAGCACTGGGCAACAGGTGGTCTCAGATTGCAGCTCAGTTACCAGGAAGAACCGACAACGAGATCAAGAATCTATGGAATTCATGCCTCAAAAAGAAGCTCAGGCAAAGAGGCATTGACCCAAACACCCACAAGCCTCTCTCTGAGATTGAGAACGAAAAGGACAAGTCTTCCTCAGCCGACAGAACCAATCTATCCAATGAACAAACTCTGGCTCATGACTCAATAAAACCAAAGCCCGCAGCTTCAATGCCTGCACAACCATACCCACTTGAAGTTTCATCCACCTCCAACACCAACGCGAGCAACAATATTTCCCAGGATATATTTCTTGATAGGTCTTCTTCTGATATGGTGGGTTATTTCTCTTTTCACCACTTCAACAGCTACGCACCAAATCCCAACACCGATACTTCTCTTTGCTTCAATCCCAGTTCCACCAATTCCTCTCAGGTTATTTCAGACCATAATTCAGCTGTCACTCCCAATATGCTCCATTCAATTTTGTCAGCACATGTGAACCCCGCTCATAGCCTCCAATCTAATAATAATCTCTCCATATCCTCTGGTGATATTGATAGTGTTCAGGCATGGGATGCCACTGCCTTCAACAACAATGGAGTCAAAAGCAGTGGGAGCAATAGCGATATCCCACTACAAAACAGCACTAACTTCCTCGAGACTCACACTTTAACATGGGAAAAAGATAGCCATGTTAACGTTGTATCCTTACAACAGGAACAAGAAGACATAAAATGGTCTGAGTATCTAAACACCCCGTTTTTTCTGGGAAATCAAGGCTCTCAATCAATCCACACTGAGGTTAAACCGGAAACGGGGTTCATTACGGATGAGTCAAGCACTAGTTGGCACCATAGCCAGCAGCATCCACAAGTTTTTCAAGCTTCAGATATATATACCAAGGATATGCAGAGATTTTCAGTGACTTTTGGACAAACACTTTAG	1212	0.4431	MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQLEENLIIELHAALGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEIENEKDKSSSADRTNLSNEQTLAHDSIKPKPAASMPAQPYPLEVSSTSNTNASNNISQDIFLDRSSSDMVGYFSFHHFNSYAPNPNTDTSLCFNPSSTNSSQVISDHNSAVTPNMLHSILSAHVNPAHSLQSNNNLSISSGDIDSVQAWDATAFNNNGVKSSGSNSDIPLQNSTNFLETHTLTWEKDSHVNVVSLQQEQEDIKWSEYLNTPFFLGNQGSQSIHTEVKPETGFITDESSTSWHHSQQHPQVFQASDIYTKDMQRFSVTFGQTL	403

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere02g0376	403	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	65	IPR017930	-
	Dere02g0376	403	PANTHER	MYB DOMAIN PROTEIN 55	1	290	-	-
	Dere02g0376	403	SUPERFAMILY	Homeodomain-like	12	108	IPR009057	-
	Dere02g0376	403	MobiDBLite	consensus disorder prediction	119	185	-	-
	Dere02g0376	403	MobiDBLite	consensus disorder prediction	119	143	-	-
	Dere02g0376	403	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	66	116	IPR017930	-
	Dere02g0376	403	CDD	SANT	17	61	IPR001005	-
	Dere02g0376	403	Gene3D	-	68	147	-	-
	Dere02g0376	403	SMART	sant	66	114	IPR001005	-
	Dere02g0376	403	SMART	sant	13	63	IPR001005	-
	Dere02g0376	403	Gene3D	-	11	67	-	-
	Dere02g0376	403	FunFam	Myb transcription factor	11	67	-	-
	Dere02g0376	403	CDD	SANT	69	109	IPR001005	-
	Dere02g0376	403	MobiDBLite	consensus disorder prediction	171	185	-	-
	Dere02g0376	403	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Dere02g0376	403	Pfam	Myb-like DNA-binding domain	67	111	IPR001005	-
	Dere02g0376	403	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Dere02g0376	403	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Dere02g0376	403	FunFam	MYB transcription factor	68	140	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere02g0376	Dere-ChrDere02	3782700	3784115	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere02g0376	1	403	MYB Transcription Factor Family	AT1G09540	48.471	1.88e-111	329

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere02g0376		Myb_DNA-binding	2.6e-15	CL0123