Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0374 ATGCCTCTGTACGAGTTATACCGGATGGCTAGAGAAAAGCTTGATTCTAAAGACATGAACAGCACATGTGCAACCGATCAATATTCCGCACCAGAGAATGACTTTTTTGAGTTGGTTTGGGAAAATGGTCAGATTTCAATGCAGGGACAATCCAGCAGAGCTAGAAGGAGCCCGACTTGTAAGAGTTTGCCATCTCACTGTTTACCGTCTCACAGTGCCAAGATTCGAGATAAAGATGTGGGAAATGGCACCAATACCAGGATGGGAAAGTTTGGGGATTTAGACTCTGGATTGAATGAAATTCCAATGTCGGTGCCATCAGGTGAAGTGGATTTGAGCCCAGACGAAGGCGTGACTCCTTGGTTGAATTATACTATAGATGACTATTTGCAACATGACTATAATTCTGAGTTTTTGCATGGACTATCTGGGGACACCGTAAGTGAGATCTCTGCCTCAGATGATTTTTCTCTAATGGAGAAAAGACATAATAGTAATCAGGAATTTAGGGACTGTCATAGAAATCCTGTGCGTGATGTTTCAAGTTCAGAACAAGGAATCATTTCGAGGGGACTTTCAGCTGGAGAAGTTGAGACCATTAGAACTAAAGCTTGCACCACTCAGCTATACCCACCATCATTGCAGCAGTGTCAAGCATCATTTGCATCTGTTAGATCCAGAGTATCGGATATCACTGAAAATAACACTAATAATGCCACCCAGCATGCACCTTGTGGGGAAAACACTCAGATTGCATCTGCCTCTGTTGGTTTTTCTAGCTTAAAGATGCCGAAGCAAGATCCAATAACTAAAAGTACTAGTTCCACTTCTACCGTAATCAACTTCTCCCACTTTGCAAGACCTGCTGCTATCATGAGAGCCAATCTTCAGAGCATTGGGAAGACGTCCGGTTTATCTTTAGCAAGATCAGGAAGCATGGTAAATATGAACAAAGATGCTGCTGCAACTAGCAGCAACCCTCCAGAATCATCGTCTATTGGGCCTAGGAGTGAACTTCCAAGGGAATCAAATACGCACTGCCAACAGCATATGGATTCCTCCAAGGCCGATTTGATACCATTGGAGCCGAAATCTCTTGGACAGAATGGTGCTGCTTCTAACCAGTCTGACCCTGCCTGTAAAAAGGATACCTTTAAGGATGATCAAACTTCTAATCAAGTTCTTGGTGAGAGTGGCACTAAAGGACATACAGCAGTTGAAAAAAGCACTGAGCAGGTAGTGGCCTCTTCCTCTGTTTGCTCTGGCAATGGCGTAGAGAGGCTTTCAGACAACTCAAATCAAAATTTGAAGCGAATAAGTCGAGATACCGATGACTCTGAGTGCCACAGTGAAGATGTTGAGGAAGAATCAGTGGTTGTTAGAAAGGCAGCTCCCGCACGAGGAGGCACGGGTTCCAAAAGAAGCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAAGCGAAGAGACAGGATCAATGAGAAGATGCGTGCACTACAAGAACTCATACCGAATTGCAACAAGGTGGATAAAGCTTCAATGCTGGATGAGGCAATCGAGTATCTTAAGGCACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCTGGTTTATATATGCCTCCAATGATGTTACCCCCTGGAATGCAGCACATGCATTCACCAATGTCTCCCTTTCCACCTATGGGCGTTGGCATGCCAATGGGCTTAGGAATGGGATATGGGATGGGTATGCCTAACATGAATAGTGGATCTTTAAGATTTCCGATAATTCAGGTGCCCCAAATGCAAGGAACTCACCTCTCTGTTCCCTCCTTGTCTGGGCCCACTGCTTTACATGGAATGGCAAGATCAAATCCTCAAATGTTTGGGCTTCCTGGTCAAACACTTCCCATACCAATGCCACAAGCACCTATGATTCCTTTGTCAGGAGCGCCTCTTATGAACTCATCAGCTTTGGGATTAAATGCTAGTGGAACGGCTGGACTTGTGGAAAATATGGATTCTGTTTCAGCCTCTGGCTTAAAGGATCCTATGCCAAACGAGAACTCTCTAGTTGTACAAAGCACTGGTGGCAGTGATCAAACAAGTCAGATGCCTACCCAGTGTGAAGCAACAAATGTTGGATTAGAAGAATCGGCTTTGGCACATAATAGTGGTCATGCCACTAATGCTGATGACAAGGGAGTTGTTAATCCTGTGGAAGAAGTTAATCTCGTAACTAGTAAAACCTGCCCGCAGGTCATGAACGGTGCTCAACAATGA 2265 0.4455 MPLYELYRMAREKLDSKDMNSTCATDQYSAPENDFFELVWENGQISMQGQSSRARRSPTCKSLPSHCLPSHSAKIRDKDVGNGTNTRMGKFGDLDSGLNEIPMSVPSGEVDLSPDEGVTPWLNYTIDDYLQHDYNSEFLHGLSGDTVSEISASDDFSLMEKRHNSNQEFRDCHRNPVRDVSSSEQGIISRGLSAGEVETIRTKACTTQLYPPSLQQCQASFASVRSRVSDITENNTNNATQHAPCGENTQIASASVGFSSLKMPKQDPITKSTSSTSTVINFSHFARPAAIMRANLQSIGKTSGLSLARSGSMVNMNKDAAATSSNPPESSSIGPRSELPRESNTHCQQHMDSSKADLIPLEPKSLGQNGAASNQSDPACKKDTFKDDQTSNQVLGESGTKGHTAVEKSTEQVVASSSVCSGNGVERLSDNSNQNLKRISRDTDDSECHSEDVEEESVVVRKAAPARGGTGSKRSRAAEVHNLSERKRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKALQLQVQMMSMGAGLYMPPMMLPPGMQHMHSPMSPFPPMGVGMPMGLGMGYGMGMPNMNSGSLRFPIIQVPQMQGTHLSVPSLSGPTALHGMARSNPQMFGLPGQTLPIPMPQAPMIPLSGAPLMNSSALGLNASGTAGLVENMDSVSASGLKDPMPNENSLVVQSTGGSDQTSQMPTQCEATNVGLEESALAHNSGHATNADDKGVVNPVEEVNLVTSKTCPQVMNGAQQ 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0374 754 FunFam Basic helix-loop-helix transcription factor 471 534 - -
Dere02g0374 754 SMART finulus 482 531 IPR011598 GO:0046983
Dere02g0374 754 MobiDBLite consensus disorder prediction 318 412 - -
Dere02g0374 754 MobiDBLite consensus disorder prediction 464 485 - -
Dere02g0374 754 MobiDBLite consensus disorder prediction 71 95 - -
Dere02g0374 754 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 473 538 IPR036638 GO:0046983
Dere02g0374 754 MobiDBLite consensus disorder prediction 318 352 - -
Dere02g0374 754 Gene3D - 471 534 IPR036638 GO:0046983
Dere02g0374 754 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 476 525 IPR011598 GO:0046983
Dere02g0374 754 MobiDBLite consensus disorder prediction 389 412 - -
Dere02g0374 754 Pfam Helix-loop-helix DNA-binding domain 480 526 IPR011598 GO:0046983
Dere02g0374 754 CDD bHLH_AtPIF_like 476 538 IPR047265 -
Dere02g0374 754 PANTHER TRANSCRIPTION FACTOR PIF3 1 699 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0374 Dere-ChrDere02 3765503 3769150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0374 1 614 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.238 7.04e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere02g0374 HLH 1.5e-13 No_clan