Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0373 ATGACAAGAGCCAAGGTGAAGCTTGCGTATATCACCAATGACGCAGCAAGAAAAGCAACATTCAAAAAGAGGAAGAAAGGTTTGACGAAGAAGATGAGCGAACTCACCACTCTGTGTGGGATTGAGGCGTGTGCAATTATTTTTGGGCCGGGCGATCCTGGACCCGAGGTTTGGCCAAGCCCAAATGCAGCCCACGACGTGATCTCCAAGTATCAGGTTATGCCCGAGTTGATTCAAGCGAAGCAGAAGCTGAATCAAGAGAGCTTCATGAAGCAGAGGATCGAGAGAGCGACGGAGCAGCTGAAGAAGATGCGAAGGGAGAACAAGGAGAAGACGATGAGGCTAGCTATGGTGGAACGCGTCGGGATACAGGGCATGAGCCTCACGAATCTGCAGGACATGGCATGGATGATCGACGACAACTTGAGGGATGTCGACGAGAAGATGAAGGCAATGGACAAACACTTGGTCGCTGCTAAGGAGGAAGTGTATGTGCCAGAACCACCTGCGATCTCCGATGGATTCATGACCGTTGATGAACAGAATTCGCAGATGGTGAATCAGAGTTCTTCGGAACTTGAGATGGATGGAGTTGGAAAGCAGAAATTGTGGAATGAGATGTTGGATTCTCATGATCCACCAGTTGGAGACATCAAACAGCACATTGCTGTTTGGCCTCACATCGATTAA 690 0.4913 MTRAKVKLAYITNDAARKATFKKRKKGLTKKMSELTTLCGIEACAIIFGPGDPGPEVWPSPNAAHDVISKYQVMPELIQAKQKLNQESFMKQRIERATEQLKKMRRENKEKTMRLAMVERVGIQGMSLTNLQDMAWMIDDNLRDVDEKMKAMDKHLVAAKEEVYVPEPPAISDGFMTVDEQNSQMVNQSSSELEMDGVGKQKLWNEMLDSHDPPVGDIKQHIAVWPHID 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0373 229 Gene3D - 13 118 IPR036879 GO:0003677|GO:0046983
Dere02g0373 229 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Dere02g0373 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Dere02g0373 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere02g0373 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere02g0373 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere02g0373 229 CDD MADS_SRF_like 2 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Dere02g0373 229 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Dere02g0373 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 179 - -
Dere02g0373 229 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Dere02g0373 229 Coils Coil 87 121 - -
Dere02g0373 229 Coils Coil 142 162 - -
Dere02g0373 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0373 Dere-ChrDere02 3743448 3744137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0373 1 152 Type I MADS-box Gene Family AT5G48670 46.795 2.02e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere02g0373 SRF-TF 6.4e-17 No_clan