Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0356 ATGGCGTCAATGAACTGGTTGGGTTTCTCTCTCTCTTCTCAAGAACTTGCTTCGCAGCCTGCTAATCAAGATCATTGTGGACTCGGCTTCAGCTCTGACGAAATCTCCGGAACAGATGTATCCGGCGAGTGCTGTTATATCAACTCTGACGACTCTGCCGCTCATTCACTCAACCTCCCTCCTTCTTTTGGCATATTTGAAGCATTGAACAGAAATAATAATCCAGAATGGGAGGACATTAAGGGTTTGGGAAGCAGCAAGACAGACAAGTACAAGACGAGCATGGTAATGGGGAGTTCAAGCAGCAGCAGCAGAGAACAGGAACCGAAACTTGAAAACTTGCTGGGGCGAGGCGAACATGAGGACTCCAGAGATTATATATTCCCAAACTCTTGTCTGCAAGTTGAAGCCGCCGCAGCAGGTGGTGGCAGTGGTACGAGCGGCAGTAGTAGCTCCATTGGGTTGTCTATGATAAAGACGTGGCTCAGAAACCAGCCCAACAACGACAGCGGAAGCGGTGGCGCTCACACTTTATCACTTTCCATGAGTACGGGATCACACTCAAGCTCGCCAGTACTGCCTCTTCTTACGCCCTCTGTGGGAGCTCCGGCAGCCGCTTCCTCGTCCGATAACGACCGTCCCCAAACCTCCACCCAAACTCCTCTTGACAGTACTACTCTCCCCAAAAAGTCCATTGACACTTTTGGTCAGAGGACTTCCATATACCGTGGTGTAACTAGGCACAGGTGGACCGGCAGATATGAGGCTCACCTTTGGGATAATAGTTGTAGAAGAGAGGGCCAAACTCGCAAAGGAAGGCAAGGAGGTTATGACAAAGAAGATAAGGCAGCGCGAGCTTACGATTTAGCTGCACTAAAATACTGGGGAACCACTACAACTACAAATTTTCCTATTAGCAACTATGAAAAGGAGCTTGAAGATATGAAGCACATGACAAGGCAAGAGTACGTAGCGTCACTTAGAAGGAAGAGTAGTGGGTTTTCTCGCGGTGCATCCATATATCGAGGAGTAACAAGGCATCACCAACACGGTAGATGGCAAGCTAGGATTGGAAGAGTTGCAGGCAACAAAGATCTGTATCTGGGAACTTTCAAGTTGGGTATATACATTAATAATAGAGTTGATGGATCAGGCACCCAGGAAGAGGCGGCAGAGGCATATGATATTGCAGCCATCAAGTTCCGAGGACTGAACGCCGTCACAAACTTCGACATGAGTAGATACGACGTTAAAAGCATACTTGAGAGCAGCACCTTGCCCATTGGTGGTGCTGCCAAGCGTTTAAAAGATGTGGAGCATGCCCAATCCCTCACTGCTCCTCCTCCTGCTACTCTTGGCCTCGCGGATTCCCACTCCCAAACACTACAACATCCTGATGCTCTCTGGCCTCCTTATGCCTTCCACTACCCTTACGCCCAAGGACAAAGGCTCTTCTGCAAGCAGGAGCAAGATTCTGATCATCATCACACCTTTCATCAAGATATTAGTACCCACAATTTCCTGCAATCTAATTCTGGTTTCCTCACTATAGACTCCTCATCATCCCATTCTGCTTCCATGGGCATGGATATCAATAATAACTCCCTCGTTTATGCTCATGATCATCGCGCAGCTGCTGATGCTAATTCTAATGCTAATGCCTCATATGGAGGCTACCAGCTCATTCCCCTGCCTTGTGATGCTAACCAAAATCAAAGAAGCGTTGCCATTAATCATGGTTTGGGAGATAGTGCTTCTGCCTACGAAACTGTCTTTACCTCTTCTGATCCTTATCACCATCATGCAAGGAACTTGTATAATTATATTTCGCACCAATCAGCTGCAGATGATGCAGTTAAAGCCAGTGTATACGATCAAGCCTCTGCATGCAACACTTGGGTCCCAACTGCAATTCCAACTCTTGCACCCAGATCTACCAATATGCCTCTTTGCCCCACTGCTCCGCCGTTCACATTGTTACATGAATAG 1989 0.4766 MASMNWLGFSLSSQELASQPANQDHCGLGFSSDEISGTDVSGECCYINSDDSAAHSLNLPPSFGIFEALNRNNNPEWEDIKGLGSSKTDKYKTSMVMGSSSSSSREQEPKLENLLGRGEHEDSRDYIFPNSCLQVEAAAAGGGSGTSGSSSSIGLSMIKTWLRNQPNNDSGSGGAHTLSLSMSTGSHSSSPVLPLLTPSVGAPAAASSSDNDRPQTSTQTPLDSTTLPKKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEDKAARAYDLAALKYWGTTTTTNFPISNYEKELEDMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFKLGIYINNRVDGSGTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESSTLPIGGAAKRLKDVEHAQSLTAPPPATLGLADSHSQTLQHPDALWPPYAFHYPYAQGQRLFCKQEQDSDHHHTFHQDISTHNFLQSNSGFLTIDSSSSHSASMGMDINNNSLVYAHDHRAAADANSNANASYGGYQLIPLPCDANQNQRSVAINHGLGDSASAYETVFTSSDPYHHHARNLYNYISHQSAADDAVKASVYDQASACNTWVPTAIPTLAPRSTNMPLCPTAPPFTLLHE 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0356 662 CDD AP2 240 306 IPR001471 GO:0003700|GO:0006355
Dere02g0356 662 Pfam AP2 domain 241 296 IPR001471 GO:0003700|GO:0006355
Dere02g0356 662 Gene3D AP2/ERF domain 340 413 IPR036955 GO:0003700|GO:0006355
Dere02g0356 662 Gene3D AP2/ERF domain 241 306 IPR036955 GO:0003700|GO:0006355
Dere02g0356 662 FunFam AP2-like ethylene-responsive transcription factor ANT 240 306 - -
Dere02g0356 662 SUPERFAMILY DNA-binding domain 240 306 IPR016177 GO:0003677
Dere02g0356 662 ProSiteProfiles AP2/ERF domain profile. 241 304 IPR001471 GO:0003700|GO:0006355
Dere02g0356 662 SMART rav1_2 340 417 IPR001471 GO:0003700|GO:0006355
Dere02g0356 662 SMART rav1_2 241 310 IPR001471 GO:0003700|GO:0006355
Dere02g0356 662 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 108 499 - -
Dere02g0356 662 MobiDBLite consensus disorder prediction 164 195 - -
Dere02g0356 662 MobiDBLite consensus disorder prediction 202 230 - -
Dere02g0356 662 CDD AP2 339 413 IPR001471 GO:0003700|GO:0006355
Dere02g0356 662 SUPERFAMILY DNA-binding domain 339 413 IPR016177 GO:0003677
Dere02g0356 662 ProSiteProfiles AP2/ERF domain profile. 340 411 IPR001471 GO:0003700|GO:0006355
Dere02g0356 662 MobiDBLite consensus disorder prediction 164 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0356 Dere-ChrDere02 3507497 3511134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0356 109 571 AP2-EREBP Transcription Factor Family AT5G17430 51.340 5.35e-133 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere02g0356 AP2 2.2e-08 CL0081