Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0317 ATGGGTGGCGTTCCCTGGACCAAAGAAGAAGATCACCTCCTCAAGACATGCATACTCCAGTACGGCGAAGGAAACTGGCATCGCCTTCCTCTCTTGTCTGGTCTAAAGAGGTGCCGAAAAAGCTGTAGGCTGAGATGGTTGAACTATCTCCGTCCCAACATCAAAAGAGGTAATTTTACCGACGAGGAGGTCCAATTGATCATCAGGCTTCACAAACTATTGGGCAACAGGTGGACGATAATTGCTGGAAGGCTTCCGGGAAGGACGGCGAACGACGTAAAAAACTATTGGAACTGTCATTTGAGTAAGAAATTATCAAATGGTGAAGGAGAAGAGAAGCAACGTCGTGGCAGAGAAATGCAGCAAGCGACAGAAGGTGGTGCTCCTGCCTTAATGGCTGATGAACAAGAAGTGGAGGGTGATATGATGAACATATCTCAGTCGCATAAGGAAGAGGGCAATGATGGGGAGGAGGTGACAATGACGGAGTTTGAATTTGAGGAAGTTAAACCCAGCAACTCCAGCCCCACCCTGTGGGATCCAAAATGGGATGACTTCCTCTTAGACTTGGACCTTATCTAA 582 0.4759 MGGVPWTKEEDHLLKTCILQYGEGNWHRLPLLSGLKRCRKSCRLRWLNYLRPNIKRGNFTDEEVQLIIRLHKLLGNRWTIIAGRLPGRTANDVKNYWNCHLSKKLSNGEGEEKQRRGREMQQATEGGAPALMADEQEVEGDMMNISQSHKEEGNDGEEVTMTEFEFEEVKPSNSSPTLWDPKWDDFLLDLDLI 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0317 193 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Dere02g0317 193 SMART sant 55 103 IPR001005 -
Dere02g0317 193 SMART sant 2 52 IPR001005 -
Dere02g0317 193 MobiDBLite consensus disorder prediction 107 131 - -
Dere02g0317 193 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Dere02g0317 193 Gene3D - 4 55 - -
Dere02g0317 193 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Dere02g0317 193 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Dere02g0317 193 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Dere02g0317 193 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Dere02g0317 193 Gene3D - 57 126 - -
Dere02g0317 193 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 144 - -
Dere02g0317 193 ProSiteProfiles Myb-like domain profile. 5 50 IPR001005 -
Dere02g0317 193 CDD SANT 58 101 IPR001005 -
Dere02g0317 193 FunFam Myb transcription factor 3 55 - -
Dere02g0317 193 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0317 Dere-ChrDere02 3164315 3165121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0317 6 104 MYB Transcription Factor Family AT1G66370 75.758 2.36e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere02g0317 Myb_DNA-binding 3.7e-12 CL0123