Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0301 ATGGATACCTTTAAGAGCAACATTGATGGGAGGTTTGATCCTTTTAGTGATAAGGTGGGTATTGACATTATCTTTAGAAACCATGTGGGGAATGTGCTAGAATTATATGCATCTCTATGTAAAGCTTCTTACGCTACAATAGCAAAAGCTATAGCACTTAGAAAAGACATCCCCATGGTTGTGGACTTGGGGCTTAAGAAAGCTGTATTGAAGCTATTACAAGAATTTGGCAAAGACACACAGTCCACACAACTCCAGGACCCGCTCTGCAGGAGAGAAGTGAGGGAGAGGTGTCCGAAAATGTTGAAGTTGTCTCGCATGTTGGCTTCCAGGCATCAATTATCTGAAACATTGTCATCACAGAAAGCCGACCTTAGAGACAGTCTATGGCATTTGTGTGGTTCTACCCATTCAGCTGGCATTTCTACTGCTACAAATAAATATTCTGCTAAAGGATATACGTCAAGTAAAATTTTTGCTCCTTATTCTGTTTTCAAAGGCAAAGCTGCACTCTCTCTGAGTCCCAGTCTTCCAACTTTCACTAAGTTGGATTCTGGGACTGTCATAGTTGATCGCCGTGGTTCAATGATGATGACTTTTACACCTGCTGTTGGTGAGCGCAAATATGACTGGGAGAAGAAACAGAGATTTGCTCTCTCAGCAACGGAGGTTGGCTCTTTGATAAGCATGGGTCCCATAGATTCCTGTGAATTCTTTCATGACCCCGCGATGTTATCAAGTAATGCTGGTCAAGTCAGGAAGAGCTTATCAATTAAGCCACATGCGGATGGTTCTGGCTACTTCATGTCCTTGACTGTTGTCAACAACATTTTAAAAACCAAAGAATATATAACTGTTCCTGTTACAACTGCTGAGTTTGCTGTGATGAAGACTGCTTGTAGTTTTGCATTGCCGCACATTATGGGTTGGGATCGTCTGACGCATGATCAGTCCAGAGGCATGGATGGTCATCAATCAAAGGTGGACCCACAAGTTTTAGACTTGGAGTGGGAAAAGTAA 1020 0.4245 MDTFKSNIDGRFDPFSDKVGIDIIFRNHVGNVLELYASLCKASYATIAKAIALRKDIPMVVDLGLKKAVLKLLQEFGKDTQSTQLQDPLCRREVRERCPKMLKLSRMLASRHQLSETLSSQKADLRDSLWHLCGSTHSAGISTATNKYSAKGYTSSKIFAPYSVFKGKAALSLSPSLPTFTKLDSGTVIVDRRGSMMMTFTPAVGERKYDWEKKQRFALSATEVGSLISMGPIDSCEFFHDPAMLSSNAGQVRKSLSIKPHADGSGYFMSLTVVNNILKTKEYITVPVTTAEFAVMKTACSFALPHIMGWDRLTHDQSRGMDGHQSKVDPQVLDLEWEK 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0301 339 Pfam Whirly transcription factor 164 298 IPR013742 GO:0003697|GO:0006355|GO:0006952
Dere02g0301 339 SUPERFAMILY ssDNA-binding transcriptional regulator domain 156 320 IPR009044 GO:0003677|GO:0006355
Dere02g0301 339 Gene3D Transcriptional Coactivator Pc4; Chain A 149 324 IPR009044 GO:0003677|GO:0006355
Dere02g0301 339 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 113 339 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0301 Dere-ChrDere02 3004302 3009841 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0301 107 339 Whirly Transcription Factor Family AT1G71260 60.669 6.67e-94 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Dere02g0301 Whirly 2.8e-57 CL0609