LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere02g0294	ATGGCCAATCATTCGAACTTGCTGTGTTTGTTGTTCATCAATGTGTTGCTACTTTCTCACTCGCCTTACCACTTGACCGTCGCTGCTGAAGCTCTGGTCACCGATCCGCCGTCGCAAAAGCGTGCCTTGTTCGGTTTTCCAGTGGTGATTCACAGAGCCTCCGGAATCGCACCACCACCACCCCCTATGCACAACCTTCCCGATCCTCCTCCCTCTCTGATTTCACCCTAGTTGGGCATATTCGATGATGTAGCTTATGTTTATGTTATGTGCCAAGAAAAGGCAGATCACAATCACGCAGGGATATATTCCCCTAGACAAAAAGGGGAGAGGAGGCAGGGTGGCTCTAGAGGCCTCGTGAACAAGAAGAAAAAGACTCGAAAGGTCAAACGGGAAGAATTAGGATTAGGAATTGATTGTGGGGGCTGGAGGAGTTGTTTTGTTGGAATTGCAGAAGCAAGAAGAATGGCGAACCGGTGGTGGACGGATTCCGTGGGCGTGGCCGGAGTGGAAAACTCAGGTTCGCCGATGAAGAAATCGGAATTGGGTATGAATGGGGGAACCGCAAACAAAATGGAAGAAGAAGAAGAAGGAGAAGGAGAAAAAGAGAACAGCACCGATGAGCCAAAAGAAGGAGGAATCGAGGTAGCGAGCAGTCGCCGGCCCAGGGGCCGCCCAGCTGGGTCCAAAAACAAGCCCAAACCACCCATTTTCGTCACCAGGGACAGCCCTAACGCACTCCGAAGCCACGTCATTGAAGTAGCCAACGGAGCCGACATTGCTGATAGCGTGGTTCAGTTCGCCAGAAGGCACCAGAAAGGTATCTGCGTCCTCAGCGCCAACGGCACCGTCACCAACGTCACTCTTCGCCAGCCAACCGCCGTCATGGCACTTCCCGGTCGCTTCGAGATACTATCATTGACCGGCTCGTTTCTGCCGCCGCCAGCCCCACCCGGCTCCGCCGGTCTGACCATATATCTGGCCGGAGGGCAGGGACAGGTAATTGGCGGTGGGGTGGTGGGTCCGCTCGTGGCCTCAGGACCCGTTATGATTATGGCAGCTACATTTTCTAATGCAACGTACGAGAGGTTACCCCTTGAAGAGGAAGAGGGTGGCGCCGCCGGTGGTGGGTCACCTCCCGGAATAGGAGCTAATACGGGCGGCGAGGCTTCGTCGTCGTCCATGCCGGTTTATAATGTTCCACCCAACGGCCAACATATAAACCATGAAGCTTATTCTTCCTGGGCTCATGCTCATGGGAGGCCACCCTACTAG	1275	0.5427	MANHSNLLCLLFINVLLLSHSPYHLTVAAEALVTDPPSQKRALFGFPVVIHRASGIAPPPPPMHNLPDPPPSLISPXLGIFDDVAYVYVMCQEKADHNHAGIYSPRQKGERRQGGSRGLVNKKKKTRKVKREELGLGIDCGGWRSCFVGIAEARRMANRWWTDSVGVAGVENSGSPMKKSELGMNGGTANKMEEEEEGEGEKENSTDEPKEGGIEVASSRRPRGRPAGSKNKPKPPIFVTRDSPNALRSHVIEVANGADIADSVVQFARRHQKGICVLSANGTVTNVTLRQPTAVMALPGRFEILSLTGSFLPPPAPPGSAGLTIYLAGGQGQVIGGGVVGPLVASGPVMIMAATFSNATYERLPLEEEEGGAAGGGSPPGIGANTGGEASSSSMPVYNVPPNGQHINHEAYSSWAHAHGRPPY	424

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere02g0294	424	MobiDBLite	consensus disorder prediction	385	410	-	-
	Dere02g0294	424	SUPERFAMILY	AF0104/ALDC/Ptd012-like	245	369	-	-
	Dere02g0294	424	Gene3D	-	247	372	-	-
	Dere02g0294	424	Pfam	Plants and Prokaryotes Conserved (PCC) domain	248	358	IPR005175	-
	Dere02g0294	424	MobiDBLite	consensus disorder prediction	168	243	-	-
	Dere02g0294	424	ProSiteProfiles	PPC domain profile profile.	244	379	IPR005175	-
	Dere02g0294	424	MobiDBLite	consensus disorder prediction	203	218	-	-
	Dere02g0294	424	MobiDBLite	consensus disorder prediction	100	117	-	-
	Dere02g0294	424	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15	192	417	IPR014476	GO:0003680
	Dere02g0294	424	MobiDBLite	consensus disorder prediction	100	126	-	-
	Dere02g0294	424	MobiDBLite	consensus disorder prediction	363	424	-	-
	Dere02g0294	424	CDD	DUF296	248	328	IPR005175	-
	Dere02g0294	424	FunFam	AT-hook motif nuclear-localized protein	247	371	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere02g0294	Dere-ChrDere02	2931299	2936224	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere02g0294	156	424	AT-hook Motif Nuclear Localized (AHL) Family	AT4G14465	53.559	5.79e-81	249