Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0285 ATGTTGAAGCTTGTACCTGAATTTAACAATCTTTTAAGGCAAAGAACATGCGTCAAGATCGCACTATTCCATTGGCGATCGGTGGCGACTCCATCTGCATCTGCTGCTTCATCTGTTTCTTCGCAATTCACCTACTCCAACGGTTCATATTTCCCGGTGCCTTTTCACCTTCAGCAATCTTTAGCGACACAGTACGCTGCGCCATACGCGGCGGCTTCTGTGGCTGCGCCGGCTGTGCAAATTCCTCCTACTACCGTTTATCTCCCTCCGGTGCCGGTTGCTGGTGTGTATCCTCTGCCGCAGTATGAGCAGGCGCAGCAGCTATTTCAAAGGGATGCACAGACAATTACAACTGAGGCTCTTGAGAGTGTAAAGGCAGCCATTGCAAACAGTGAGATCGAGCACAAGGCAGAGACCAAAAAGAACGCATTCCTCGCAAGGCTGCTGGCCAGACATGGGAGGATCCCACTCTTGCAGAGTGGCCAGAAATATTTCTTGTTTATAAGCAATGATTATCGGCTCTTTTGTGGTGATCTTGGTAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTTCTCGATTTCCTTCCTTTAACATGGCACGAGTTGTCAGAGACAAGCGGACAGGAAAAACAAAGGGCTACGGATTTGTAAGCTTTGCCAATCCCGCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCAATTAAACTGCGCAAGAGTAAGTGGCAGGAGAGGACAGATCATGAGGCCCTGGAAAAACAGAAGTATACCCAGTGTGTTGATGGTGTCATTGCAATGTCAATGCTAATAATCACAGATTGGCTGGTGGGAAAGAGGGTGATGTTATCAAGTAGGAGAAAGCCGGAACGAGTAGTTGAATACGACATGCATGCTTGCCTTTCTGTGCTGAACAGAACATTGATAGGGAAGTTAGGGGCACGGCAGGCTGATTAG 978 0.4714 MLKLVPEFNNLLRQRTCVKIALFHWRSVATPSASAASSVSSQFTYSNGSYFPVPFHLQQSLATQYAAPYAAASVAAPAVQIPPTTVYLPPVPVAGVYPLPQYEQAQQLFQRDAQTITTEALESVKAAIANSEIEHKAETKKNAFLARLLARHGRIPLLQSGQKYFLFISNDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFANPADLAAALKEMNGKYVGNRPIKLRKSKWQERTDHEALEKQKYTQCVDGVIAMSMLIITDWLVGKRVMLSSRRKPERVVEYDMHACLSVLNRTLIGKLGARQAD 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0285 325 Gene3D - 98 263 IPR012677 -
Dere02g0285 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 250 IPR000504 GO:0003723
Dere02g0285 325 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 244 IPR000504 GO:0003723
Dere02g0285 325 FunFam RNA-binding protein 42 101 257 - -
Dere02g0285 325 SUPERFAMILY RNA-binding domain, RBD 169 253 IPR035979 GO:0003676
Dere02g0285 325 SMART rrm1_1 173 246 IPR000504 GO:0003723
Dere02g0285 325 CDD RRM_RBM42 170 248 IPR034215 -
Dere02g0285 325 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 93 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0285 Dere-ChrDere02 2834013 2840859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0285 174 268 Eukaryotic Initiation Factors Gene Family AT1G71770 30.526 3.53e-10 59.3