Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0284 ATGAGGTTTCTGATGGGGACAGAACTTGTGAGCATTTGTGTTAAAGATGACAATGATGAGTATCCATCAGTTCCACCAGGTTTCGAGTCATGTACATCTTTCTCACTGAAGAGGGTAGAAGACAATGAGAAACACAGTGATAAAAACCTGACCAGTTCAGCCACTATGATTGCTTCTGAATCACAGGCACAGGTAGAAACTGAAGCTCATGTTAGTGATACTGCAAAGATTTCTAGGTCCCTTCGACGAAGACCATGGATCAACTATGGGCGATATGATAATAGTTCAGAGGAAGACTCTGATTCTGAGCGGCTTGACCAAAATTTCTCCTCAAGACCTTGTCTTCCTAGGGGAGTCATCCGTGGATGTTCAGATTGCAGTAATTGCCAAAAGGTTGTTGCCAGATGGCGACCAGAAGACACTTGCAGGCCCAGCCTTGAAGATGCTCCTGTCTTTTACCCAACAGAAGAGGAGTTTGAAGATACTTTGAAATATATAGCAAGCATTCGCGCCAGAGCTGAACCATATGGAATCTGCCGCATTGTCCCTCCTACTTCCTGGAAACCCCCCTGTCCTCTCAAGGAAAAAAATATATGGGAGGGTTCTAAATTCGCAACTCGTGTACAGAGGATTGACAAACTTCAGAATCGTGATTCAATAAAAAAGACTTCAAGGATTCATAATCATATGAAAAGGAAAAGGAGAAGATACCCAAGAATGGGGATGGATAGTAGAATTAATGGAGGACCTAATGCAAGATGTTGTGAGGCTGAAAGTTTTGGGTTTGAACCAGGTCCAGAATTTACCTTGGAAACATTTCAGAGATACGCTGATGATTTTAAGGCCAGATACTTCAGAAAGAATGAGAATGTGCATCATTTGGGAGGTAATACGGCAGTGCTTAAAGGCACCTTGGAGCCTTCTGTGGAAAACATTGAAGGTGAATATTGGAGAGTGGTAGAGAGGCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTAGAAACCGGGATTTTTGGGAGTGGTTTTCCTAGAAAGTCTAATCAAGTTGGTTCTGCTTCACATGAATGGTACATAAAATCTGGCTGGAATTTAAATAACTTTGCTAGGCTTCCTGGATCTGTGCTCTCATACGAAAGCAGTGATATATCTGGTGTTCTACATGTGGAAGATCATCATTTATATTCATTGAATTACATGCACTGGGGTGCTCCAAAAATGTGGTATGGTGTCCCTGGAAAAGATGCTTGCAGATTGGAGGAGGCCATGAGAAAGCATTTACCAGAGCTGTTTGAAGAACAAGCTGACTTGCTTCATAAGCTGATCACCCAGCTTTCTCCTTCCATTTTAAAATCTGAGGAAGTACCTGTCTATAGGTGTGTCCAGAACCCTGGAGAATTTGTTCTGACATTCCCACGAGCCTATCATTCTGGGTTCAACTGTGGTTTCAACTGTGCAGAGGCAGTTAATGTAGCTCCGGTTGACTGGCTGCCTCATGGGCAGATTGCTATTGAGCTGTATCAGAAGCAGGGGCGTAAGACATCTATATCCCATGACAAGCTGTTGCTTGGGGTGGCTAGAGAAGCAATAAAAGCTCAGTGGGAAATTAGTTTGAAAAAGAAGAATACAATAAATAATCTAAGATGGAAAGAAGCATGTGGAAAGGATGGCCTTCTGGTAAAAGCACTCAAGGCCCGAGTCGAGATGGAACGAGTAAGGAGATTGTTTTACAACTGTTCTTCACAGGCATTAAAAATGGAGAGCAGTTTTGATGCCACAAGTGAAAGAGAATGCAGTGTATGCTATTTTGATTTACACCTATCTGCAGTTGGTTGCCGCTGTTCCCCTGATCGATATGCTTGCTTGGATCATGCCAAGCAGCTCTGTTCCTGTGATTGGGATTCCAAATTCTTCCTCTTTCGTTATGATATTAGTGAACTGAATATACTTGTTGAGGCCCTGGAAGGAAAATTAAGTGCAGTGTACCGATGGGCCAAATTAGATCTTGGGCTTGCACTATATTCTTATGTCCCAGAAGAGAAGGAAACAATACTAAAGGAATTGAGATTGCATTCGTCAGCTGTTTTTCTTGAAGACTCTCATCTGATAGATGTTCCTATCGAGAATCTGCAAAATTCAGAAAAAATAATTGATCATAGATATTTACAACATAGGAAATCAGAAGAGGCCGTGTCTCCTTTGAGTCATATGAAGGAACTGTTAACATCTAACTGCTCAACTTCTGAATGTGAAATGGGTAATCATAAGACATCTTGCAAGAAAGATGAATCTCTTATTTGCAGTTCAAACTGGAAAACCTCTGGTTGTCAGTTGTCTCGAGAAGATATATCATATGCTTTATCTCTACCTCTAGCTGAACATGGAACTGATAAAAACTCACTTTGTGGACATGACAATATTATAATTCTTAGTGATGATGAAGGCGATGAGCTGAAGATGGCAGATTCTGACAGAGGGAAGGAATTTTCTCAGAGGCTCACATGTTCAACTGATAAAGCAAGCCCGAGTAATAATATTCATGAGCCAGACTTGACCGTCCCTGTGACTGATGCTTCTGTGATGGGTGAAAAGGATCCTTTTACATTGCCTCCTGAAAATATGAGTTCTCATGCAACTCATCTTTTGCATTTGAAACATGAACATAATAGGGGAACAGTTCTGGGTTCTACTCCATTTGATCTCTCTCGCCGTATAGGTTTTAATAGTGCAGGGTTGGTTAAAAATATTCAGGCTTCTACTACAGGACAGACCAGAGATCATAGTTTGGAAATTTCAGGTAGTTGTCCTCCAATTCTACAGCATTATGGCACGGTCAAGCCTAAGATTGAGGACTACCATGAAAGGTTTGGAGGATGTGTCACATCTAATATAGCAGACAATGTAAGAACTGTTAATGGAAACCTTTCTTGCTGTCCAAACAATTTGGAAAGGTGTTACCGTCAGAAAGGTCCTCGTATTGCAAAGGTTGTCCGGCGTATCAACTGCAATGTTGAACTTCTAGAATTTGGAGTTGTGCTCTCTGGAAAGTCATGGTGCAATAGTCGGGCTATATTTCCAAAGGGATTTAGAAGCCGTGTTAGATACTTAAGTGTTTTGGATCCATCCAGTATGGATTATTATGTTTCAGAAATTCTCGATGCTGGACGTGATGGGCCTCTATTTATGGTGTCCTTGGAGCATTGTCCAAGTGAGGTTTTCATCCATATTTCTCCTACGAGATGTTGGGAACTGGTAAGAGAAAAAGTGAATCAACAGATCACAAAGCAACATCAGCTGGGAAGAAAGAACCTTCCTCCTTTACAACCTCCTGGGAGCCTTGATGGATTTGAAATGTTTGGTTTTTCTTCACCAGCAATAGTGCAGGCTGTTGAGGCACTGGACCGAAGCCGAGTTTGTAATGAATATTGGGATTCTCGGCCATACTCCCGGCCTCAAGGGCAGATTGTGCAAGCCTCTCAACCCAAAGAAAATGGTGAAAATCTGCATGGGCCATCTGGGGAGAGAGATGGTCCAGGAGTCCTCAAGAATCAGCTCTTTCCTGTGGGAGTTGATGCAGTACTAAGAAGTCTGTTTAGAAAGGCCAATGCAGAAGAATTGAACTCACTGTACAGCATTTTATGTGACAATAGGCCACCGGCAGACCGCAGCCTAATTGCACAACTGCTCAATGAAGAGATGCACAAACATTCTAAATGA 3720 0.4207 MRFLMGTELVSICVKDDNDEYPSVPPGFESCTSFSLKRVEDNEKHSDKNLTSSATMIASESQAQVETEAHVSDTAKISRSLRRRPWINYGRYDNSSEEDSDSERLDQNFSSRPCLPRGVIRGCSDCSNCQKVVARWRPEDTCRPSLEDAPVFYPTEEEFEDTLKYIASIRARAEPYGICRIVPPTSWKPPCPLKEKNIWEGSKFATRVQRIDKLQNRDSIKKTSRIHNHMKRKRRRYPRMGMDSRINGGPNARCCEAESFGFEPGPEFTLETFQRYADDFKARYFRKNENVHHLGGNTAVLKGTLEPSVENIEGEYWRVVERPTEEIEVLYGADLETGIFGSGFPRKSNQVGSASHEWYIKSGWNLNNFARLPGSVLSYESSDISGVLHVEDHHLYSLNYMHWGAPKMWYGVPGKDACRLEEAMRKHLPELFEEQADLLHKLITQLSPSILKSEEVPVYRCVQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYQKQGRKTSISHDKLLLGVAREAIKAQWEISLKKKNTINNLRWKEACGKDGLLVKALKARVEMERVRRLFYNCSSQALKMESSFDATSERECSVCYFDLHLSAVGCRCSPDRYACLDHAKQLCSCDWDSKFFLFRYDISELNILVEALEGKLSAVYRWAKLDLGLALYSYVPEEKETILKELRLHSSAVFLEDSHLIDVPIENLQNSEKIIDHRYLQHRKSEEAVSPLSHMKELLTSNCSTSECEMGNHKTSCKKDESLICSSNWKTSGCQLSREDISYALSLPLAEHGTDKNSLCGHDNIIILSDDEGDELKMADSDRGKEFSQRLTCSTDKASPSNNIHEPDLTVPVTDASVMGEKDPFTLPPENMSSHATHLLHLKHEHNRGTVLGSTPFDLSRRIGFNSAGLVKNIQASTTGQTRDHSLEISGSCPPILQHYGTVKPKIEDYHERFGGCVTSNIADNVRTVNGNLSCCPNNLERCYRQKGPRIAKVVRRINCNVELLEFGVVLSGKSWCNSRAIFPKGFRSRVRYLSVLDPSSMDYYVSEILDAGRDGPLFMVSLEHCPSEVFIHISPTRCWELVREKVNQQITKQHQLGRKNLPPLQPPGSLDGFEMFGFSSPAIVQAVEALDRSRVCNEYWDSRPYSRPQGQIVQASQPKENGENLHGPSGERDGPGVLKNQLFPVGVDAVLRSLFRKANAEELNSLYSILCDNRPPADRSLIAQLLNEEMHKHSK 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0284 1239 ProSiteProfiles JmjC domain profile. 352 509 IPR003347 -
Dere02g0284 1239 MobiDBLite consensus disorder prediction 1151 1167 - -
Dere02g0284 1239 Gene3D - 1001 1141 - -
Dere02g0284 1239 Pfam F/Y-rich N-terminus 1005 1052 IPR003888 GO:0005634
Dere02g0284 1239 ProSiteProfiles FYR domain FYRN motif profile. 997 1055 IPR003888 GO:0005634
Dere02g0284 1239 SMART cupin_9 361 509 IPR003347 -
Dere02g0284 1239 SMART fyrc_3 1061 1155 IPR003889 GO:0005634
Dere02g0284 1239 FunFam Putative lysine-specific demethylase JMJ16 1003 1141 - -
Dere02g0284 1239 Gene3D Cupin 134 493 - -
Dere02g0284 1239 PANTHER LYSINE-SPECIFIC DEMETHYLASE 143 1095 - -
Dere02g0284 1239 SUPERFAMILY Clavaminate synthase-like 360 536 - -
Dere02g0284 1239 Pfam jmjN domain 150 183 IPR003349 -
Dere02g0284 1239 Pfam F/Y rich C-terminus 1059 1143 IPR003889 GO:0005634
Dere02g0284 1239 SMART JmjN_1 148 189 IPR003349 -
Dere02g0284 1239 Pfam JmjC domain, hydroxylase 388 492 IPR003347 -
Dere02g0284 1239 Pfam C5HC2 zinc finger 599 649 IPR004198 -
Dere02g0284 1239 MobiDBLite consensus disorder prediction 1150 1181 - -
Dere02g0284 1239 SMART fyrn_3 1011 1055 IPR003888 GO:0005634
Dere02g0284 1239 ProSiteProfiles FYR domain FYRC motif profile. 1057 1147 IPR003889 GO:0005634
Dere02g0284 1239 ProSiteProfiles JmjN domain profile. 149 190 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0284 Dere-ChrDere02 2823367 2830779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0284 5 1235 JUMONJI Transcription Factor Family AT1G08620 52.262 0.0 1181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dere02g0284 JmjC 1.5e-36 CL0029