Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0280 ATGTTTTCCCTGCGGCCAACGAAATATGCTATTTCCACAACCACAAGGCACAAAAGAGCTAAAAGTGTTGCTGGACTTTGCCAAGAGGCCCAAGGCCCATGTGGGAGCGATCAAAAGGGGGTCAAGATGAGGATTATGATAAAGGGCGGTGTTTGGAAAAACACCGAGGATGAAATCCTAAAAGCGGCTGTCATGAAGTATGGTAAAAACCAGTGGGCTCGAATCTCTTCGCTCCTGGTTCGCAAATCCGCCAAGCAATGTAAGGCTCGCTGGTACGAGTGGCTTGATCCTTCCATTAAAAAGACTGAGTGGACAAGGGAAGAGGATGAAAAACTTCTTCATCTCGCTAAGCTCATGCCCACCCAGTGGAGAACAATTGCTCCAATTGTTGGCCGTACCCCTTCTCAGTGCCTTGAGCGGTATGAGAAACTCCTTGATGCAGCCTGTGTAAAGGATGAGAACTATGAACCTGGTGATGACCCCCGAAAATTGCGTCCTGGGGAGATTGACCCAAACCCTGAGTCAAAACCTGCACGGCCAGATCCTGTTGATATGGATGAGGATGAGAAGGAAATGTTGTCTGAAGCACGAGCTAGGTTGGCCAACACTAAGGGTAAGAAGGCAAAACGGAAGGCCAGGGAGAAACAGCTAGAGGAAGCGAGGAGGCTTGCTTCTTTACAAAAAAAGAGAGAACTGAAGGCTGCTGGAATTGATGGCAGGCAGCGGAGGAGGAAAAGGAAAGGAATAGACTATAATGCAGAAATCCCTTTTGAGAAAAGGCCTCCTTCAGGGTTTTTTGATGTTACAGACGAAGACAGGCCAGTGGAACAGCCCAAGTTCCCAACCACAATTGAGGAACTTGAGGGGAAAAGAAGGGTCGATGTGGAAGCACAGTTAAGAAAGCAAGACATTGCAAAGAATAAAATTGCACAGAGGCAAGATGCCCCGTCAGCTATACTGCACGCCAACAAGCTCAATGACCCAGAAACAGTTAGAAAGAGGTCAAAACTAATGCTTCCACCACCCCAGATTTCTGACCACGAATTGGAAGAAATTGCAAAGATGGGTTATGCCAGTGACCTTGCAGGTGAGGAACTTGCAGAAGGTAGCGGTGCAACACATGCTCTTCTGGCTAATTATGCACAGACTCCTAGCCAGGGAATGACTCCTTTACGAACTCCTCAGAGAACACCAGCTGGTAAAGGAGATGCTATCATGATGGAAGCTGAAAATCTAGCCAGGTTGAGAGAATCTCAAACACCATTGTTGGGAGGAGATAACCCAGATTTGCATCCTTCAGATTTTTCTGGCGTCACTCCTAAAAGAAAAGAAATTCAGACTCCAAATCCTATGCTGACTCCTTCTGCAACCCCTGGAGGTGCAGGCCTCACTCCTAGAAGTGGTATGACACCAGCAAGGGATGGTTTTTCTTTTGGCATGACTCCTAAGGGAACTCCTCTAAGAGATGAGCTTCGAATCAATGAAGACATGGATATTCACAGTGCAAAACTTGAGCTACATAGACAAGCTGATCTCAAAAGAAGCTTGCGCTCTGGTTTAAGTAGTCTTCCGCAGCCCAAAAATGATTACCAGATAGTTATGCAACCCGTTCCAGAAGATGTTGAAGAACATGAGGAGAAGATTGAGGAGGATATGTCTGACAGAATAGCTAGGGAAAAGGCTGAGGAAGAAGCTCGGCAACAGGTATTACTTAGAAAAAGGTCAAAGGTCCTTCAAAGGGAGCTTCCTAGGCCTCCTGCTGCATCGCTGGAACTGATAAGAAATTCTTTGATTATTGCTGATGGGGACAAGAGTTCCTTTGTTCCTCCTACTTCTATCGAGCAAGCTGATGAGATAATAAGAAAGGAGCTTTTAAGCTTACTGGAACATGATAATGCCAAGTACCCACTTGATGAGAAAGTGAATAAGGAGAGAAAAAAAGGAGTCAGTCGTGCAGCAAATGGGTCTGTTGTTGTCCCTCTGATTGAAGATTTTGAGGAAGATGACTTGAAAGATGCTGATAAGTTGATAAAGGAAGAGGCTCAGTATCTTCGTGTGGCAATGGGACATGAAAGTGAACCCCTCGATGAATTTGTTGAAGCGCATAGAACTTGCCTCAATGATCTTATGTACTTCCCCACCCGTAATGCCTATGGGCTTTCAAGCGTTGCGGGAAACATGGAGAAGCTTGCAGCTTTGCAGAATGAATTTGAGAGTGTGAGAAACAAGTTGGATGATGGCAAGGAGAAGGTAGTACGTCTTGAGAAGAAGGTGATAGTTCTTACACAAGGCTATGAGATGAGGGCAAAGAAAAGTCTTTGGCCACAAATTGAGGCCACCTTCAAGCAGATGGACACTGCTGCAACAGAACTAGAGTGCTTCCAAGTTTTGCAAAAGCAGGAGCAGCTAGCAGCTTCACACCGGATAAACAATATATGGGCTGAAGTAGAGAAGCAAAAGGAACTTGAGAAAAATTTACAAAAGAGGTATGGGGATCTTCTGGCAGAGCTGGAAAGGATTCAAAATGTCATGAACCAATACAGGGTACAAGCTCAACAGCAAGAAGAAATTGCTGCCAAGAATCATGCTTTTGAGATAGCTGAGACTGCATCTGATGAAACTAAGGTGCCAGGTATAGAGAATCAGAAAGATGAATCCTACTCAGATGAGCATGAAAGTGCCATGTTAGTTAATTCAACCCATGATGAAACTGCTGACCAGCAAGTAGATGTGGTGCATGACAAGGCCGCCACTTCCAGCCTGAAAAATGGTACCAATGTGGATGCTGATAAAGAGCAAATGACACATGACACTGATGTTGAAATACACGATGCTATGCCAGCTGGACAGGGGGAGAGTGCAACAGCAGGTGACAGCACTGACAGTTGTATTGCCCAGATGGAGACCACTCAAGACACGGGTGCTGCAGAGGATACAAGAAGTATTGAGGGATATGGGGAAGATCAACGTGCTAAGAATCCAGATGATGTGGTGGAAGCCATAAACTCACATGATAACAAAACACAGGAAACCACAGCTCTAGATTAG 3048 0.4547 MFSLRPTKYAISTTTRHKRAKSVAGLCQEAQGPCGSDQKGVKMRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDGRQRRRKRKGIDYNAEIPFEKRPPSGFFDVTDEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDHELEEIAKMGYASDLAGEELAEGSGATHALLANYAQTPSQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGDNPDLHPSDFSGVTPKRKEIQTPNPMLTPSATPGGAGLTPRSGMTPARDGFSFGMTPKGTPLRDELRINEDMDIHSAKLELHRQADLKRSLRSGLSSLPQPKNDYQIVMQPVPEDVEEHEEKIEEDMSDRIAREKAEEEARQQVLLRKRSKVLQRELPRPPAASLELIRNSLIIADGDKSSFVPPTSIEQADEIIRKELLSLLEHDNAKYPLDEKVNKERKKGVSRAANGSVVVPLIEDFEEDDLKDADKLIKEEAQYLRVAMGHESEPLDEFVEAHRTCLNDLMYFPTRNAYGLSSVAGNMEKLAALQNEFESVRNKLDDGKEKVVRLEKKVIVLTQGYEMRAKKSLWPQIEATFKQMDTAATELECFQVLQKQEQLAASHRINNIWAEVEKQKELEKNLQKRYGDLLAELERIQNVMNQYRVQAQQQEEIAAKNHAFEIAETASDETKVPGIENQKDESYSDEHESAMLVNSTHDETADQQVDVVHDKAATSSLKNGTNVDADKEQMTHDTDVEIHDAMPAGQGESATAGDSTDSCIAQMETTQDTGAAEDTRSIEGYGEDQRAKNPDDVVEAINSHDNKTQETTALD 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0280 1015 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 99 IPR017930 -
Dere02g0280 1015 ProSiteProfiles Myb-like domain profile. 44 95 IPR001005 -
Dere02g0280 1015 CDD SANT 52 95 IPR001005 -
Dere02g0280 1015 MobiDBLite consensus disorder prediction 440 454 - -
Dere02g0280 1015 Coils Coil 730 757 - -
Dere02g0280 1015 MobiDBLite consensus disorder prediction 953 977 - -
Dere02g0280 1015 MobiDBLite consensus disorder prediction 981 1003 - -
Dere02g0280 1015 SUPERFAMILY Homeodomain-like 75 148 IPR009057 -
Dere02g0280 1015 FunFam CDC5 cell division cycle 5-like 102 162 - -
Dere02g0280 1015 CDD SANT_CDC5_II 97 148 IPR047240 -
Dere02g0280 1015 Coils Coil 816 857 - -
Dere02g0280 1015 FunFam CDC5 cell division cycle 5-like 47 101 - -
Dere02g0280 1015 ProSiteProfiles Myb-like domain profile. 96 145 IPR001005 -
Dere02g0280 1015 MobiDBLite consensus disorder prediction 420 464 - -
Dere02g0280 1015 SMART sant 100 147 IPR001005 -
Dere02g0280 1015 SMART sant 48 97 IPR001005 -
Dere02g0280 1015 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 43 844 IPR047242 GO:0000398|GO:0000974
Dere02g0280 1015 Gene3D - 102 156 - -
Dere02g0280 1015 Pfam Myb-like DNA-binding domain 52 112 - -
Dere02g0280 1015 MobiDBLite consensus disorder prediction 155 192 - -
Dere02g0280 1015 Gene3D - 47 101 - -
Dere02g0280 1015 Pfam pre-mRNA splicing factor component 447 695 IPR021786 -
Dere02g0280 1015 MobiDBLite consensus disorder prediction 199 218 - -
Dere02g0280 1015 Coils Coil 209 229 - -
Dere02g0280 1015 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 149 IPR017930 -
Dere02g0280 1015 MobiDBLite consensus disorder prediction 947 1015 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0280 Dere-ChrDere02 2788104 2794413 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0280 43 873 MYB-Related Transcription Factor Family AT1G09770 75.689 0.0 1241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere02g0280 Myb_Cef 1.7e-59 No_clan