Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0276 ATGCAAGCAACTTCATCAAGTTCCAACATCAGAAGTGTTGGTCACATGTTTTCATCCCCTGCTGAATGTCGTGATGACATCCCTTATTCTTCTGTTTCACAACTTGCTAAGCGGTCTCGAGATTCTCCCTTCATTTCTCAGAAATTGAGTGACAACGGCTCTTTCCTGCCTGCACATTCTTCCCAGTCAGAGATGCATTCTACGGCATTCATTCCGCATTCCCAGGAAAATGATGATATTTCCTGGGGTCCAGATCCATTTCAGGATATTCTTAATTTTCCTGAAAATGTTTCTGTCCAGAATGATCAGGTGGAAAGTCGTTCTTGTTACATACCTGATGACAACGCTAAAAAAACTGATTTTGGGGAATGGGTTGATCAGTTAATGTCAGTTGATGATTCTCTGCATCCGAATTGGAGTCAGCTTCTCGGTGATGATGATGTAACTGATTCAAAAGCAAAGGACACCCAGGTTTCCCGGCAGCAGCATGTACCATCTGAAGAAGTTAATGCCCTTCCTAACTCAGCGTCAGCTGCACCACAAACTAAGCCAAGAATGCGTTGGACTCCAGAACTTCATGAGGCATTTGTGGAAGCGGTTAATCAGCTTGGTGGTAGTGAGAAGGCTACTCCAAAGGGGGTCTTGAACCTGATGAAAGTCGAGGGCCTTACCATCTATCATGTGAAAAGCCACCTACAAAAGTATAGAACTGCAAGATACAAACCTGAGTCATCAGAAGGAACTTCTGAGAAGAAGTTGACATCAATTGAAGAAATGAAATCTCTTGACTTGAAAACGAATATGGGGATCACTGAAGCACTGCGGTTGCAAATGGAATTACAAAAGCGACTTCATGAACAACTTGAGATTCAAAGAAAGTTGCAGATTCAAATTGAGAACCAAGGCAAGCGTCTTCAGATGATGTTTGAGAAACAGAGAGAAATGGAGGACGGCAAACTCAAGGGCTCCACTTCCTTGGATGAGCCTTCTGCTCCATCGTCAAACAAGGTGGCACCTTCCTCTCCAGTTGACAACTTAGAAATCTTAAATGAGGGACATGACAAATCTGGAATAAGCAGTAGCATTGCAAAATCCATGCCTGAAGAAAGTTCCCAGCATGCAAGCACAAAGCTTGAAGCAGATGATATTGGGGTTGAACATGACCGGCGAGATGATCAATTTGATGCTCCACCTACGAAACGGGTGAAGAGTTAA 1215 0.4346 MQATSSSSNIRSVGHMFSSPAECRDDIPYSSVSQLAKRSRDSPFISQKLSDNGSFLPAHSSQSEMHSTAFIPHSQENDDISWGPDPFQDILNFPENVSVQNDQVESRSCYIPDDNAKKTDFGEWVDQLMSVDDSLHPNWSQLLGDDDVTDSKAKDTQVSRQQHVPSEEVNALPNSASAAPQTKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPESSEGTSEKKLTSIEEMKSLDLKTNMGITEALRLQMELQKRLHEQLEIQRKLQIQIENQGKRLQMMFEKQREMEDGKLKGSTSLDEPSAPSSNKVAPSSPVDNLEILNEGHDKSGISSSIAKSMPEESSQHASTKLEADDIGVEHDRRDDQFDAPPTKRVKS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0276 404 MobiDBLite consensus disorder prediction 1 15 - -
Dere02g0276 404 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 174 350 IPR044848 GO:0003700
Dere02g0276 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 181 240 IPR017930 -
Dere02g0276 404 Coils Coil 271 291 - -
Dere02g0276 404 MobiDBLite consensus disorder prediction 374 404 - -
Dere02g0276 404 MobiDBLite consensus disorder prediction 326 341 - -
Dere02g0276 404 FunFam Myb family transcription factor 182 240 - -
Dere02g0276 404 Pfam Myb-like DNA-binding domain 185 236 IPR001005 -
Dere02g0276 404 Pfam MYB-CC type transfactor, LHEQLE motif 268 314 IPR025756 -
Dere02g0276 404 NCBIfam myb-like DNA-binding domain, SHAQKYF class 183 237 IPR006447 GO:0003677
Dere02g0276 404 SUPERFAMILY Homeodomain-like 181 237 IPR009057 -
Dere02g0276 404 MobiDBLite consensus disorder prediction 159 182 - -
Dere02g0276 404 MobiDBLite consensus disorder prediction 354 373 - -
Dere02g0276 404 MobiDBLite consensus disorder prediction 1 23 - -
Dere02g0276 404 MobiDBLite consensus disorder prediction 41 68 - -
Dere02g0276 404 MobiDBLite consensus disorder prediction 314 404 - -
Dere02g0276 404 Gene3D - 182 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0276 Dere-ChrDere02 2755137 2757961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0276 64 339 G2-like Transcription Factor Family AT3G04450 51.852 5.71e-84 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere02g0276 Myb_DNA-binding 1.3e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0276 02 2755137 2757961 Dere02g0838 02 7917884 7922264 CCT
Dere02g0276 02 2755137 2757961 Dere02g0276 02 2755137 2757961 ECH