Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0268 ATGGGGACTCCTGTGAATATTATTGTGGGTTCTCATGTCTGGATTGAAGACCCAGATGTATCTTGGATTGATGGAGTGGTATCAAAAATCAATGGAACAGATGCAGAAATTGAAACAACCAATGGAAAAAAGGTTGCAAAATTATCAAAAATATATCCCAAAGATATGGAAGCTCCTGCTGGTGGAGTGGACGACATGACAAAGCTGTCTTACTTGCACGAACCAGGAGTCCTGCAGAACTTGAAAACTAGATATGAATTGAATGAAATATATACTTATACTGGAAATATTTTAATTGCAATAAATCCATTCCAAAGACTACCCCATCTCTATGATGCTCACATGATGCAACAATACAAGGGAGCACCATTTGGAGAATTAAGCCCTCATGTATTTGCAGTTGCTGATGTTGCATTTAGGGCAATGGTTATTGAAGGAAAAAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCGATACCTTGCTTACCTAGGTGGTAGGGCTGCTACTGAAGGAAGAACAGTTGAACAACAAGTTCTTGAATCAAATCCAGTTCTTGAAGCATTTGGCAATGCAAAAACAGTCAGGAATAACAACTCCAGCCGTTTTGGAAAATTTGTTGAGATCCAATTTGATAAGAGTGGGAGAATCTCAGGAGCAGCCATCCGAACTTACCTTTTGGAGAGATCTCGCGTTTGCCAAATTAACGATCCTGAACGCAACTACCACTGCTTCTATCTTCTTTGTGCTGCACCACAGGAGGAAATTGAGAAATACAAATTAGGACATCCTAAATCATTTCATTACCTTAACCAGTCAAATTGTTATGAACTGGTTGATTCAAGTGATGCTCGTGAGTATCTTGCCACCAGGAGAGCTATGGATGTTGTCGGAATAAGCCAAAAAGAGCAGGAAGCAATTTTTAGAGTTGTTGCAGCAATTCTCCATCTTGGTAATATTGCTTTTGCCAAAGGAAAGGACGTTGACTCATCAGTTCCCAAAGATGACAAAGCCAAATTCCACTTGGCAACAACTGCTGAGCTTCTCATGTGTGATGCTGATGCCTTGAAAGATGCATTATGCAAACGTGTCATGATCACCCCTGAAGAGGTTATAAAAAGGAGCCTTGATCCCCAGAGTGCAGCAATCAGTAGAGATGGCTTGGCAAAAACAATTTATTCCCGGCTATTTGACTGGTTGGTGGACAAGATTAATAACTCCATCGGCCAAGATCCTAATTCCAAATCTTTGATTGGAGTCCTTGATATCTATGGTTTTGAAAGCTTTAAAACTAACAGCATGTTTCCAAAGTCAACACATGAAACATTTGCAAATAAGCTTTATCAAACATTTAAGAATCACAAGCGCTTTATAAAGCCAAAATTGTCTCGAACAGATTTCACTATTGCTCATTATGCTGGGGAGGTCTTATACCAGTCTGATCAATTTTTAGACAAAAACAAGGATTATGTGGTTCCTGAACATCAAGATTTGTTGGGTGCTTCCAAATGTTCTTTTGTAGCGGGGCTTTTTCCTCCACTTCCAGAAGAAACATCTAAATCTTCCAAATTTTCTTCAATTGCATCTCGTTTTAAGCTACAACTACAGTCACTAATGGAAACACTAAACTCTACAGAGCCTCATTACGTCAGATGTGTGAAACCGAACAACCTCCTCAAGCCTGCAATATTTGAGAATGTCAACATTATGCAACAGCTACGCTGTGGTGGTGTTTTAGAGGCAATCAGAATCAGTTGTGCTGGCTATCCTACTCGCCGTCCTTTCTTTGAATTTGTAAACCGATTTGGCCTCCTTGCCCCAGAGGCCATGGAAGGCAACATTGAAGAAAAGGTTGTTTGCCAAAAGATTCTGGAAAAGATGGGCCTAAAAGGATATCAGATAGGACAAACAAAGATATTCCTGAGAGCAGGTCAGATGGCTGAACTTGATGCACGGAGAGCTCAAGTACTCAGTACTGCAGCAAAAGTTATCCAACGGCGCATACGAACCCATCAAGCTCGTAATCATTATCTTGCTTTGCGAATGACTACCATATTCATGCAGTCTTTGTGTAGAGGTAGACTTGCATGCGAACTCTTTGACAACATGAGAAAGGTGGCTGCTGCTAAGAAAATTCAGAAGAACATACGCCGATATGAAGCTAGAAAAGCCTATAAAAGACTCCATGCAGCTGGACTTACCTTGCAAACAGCTTTACGGGCAATAGCTGCACGTAAGGAATTCAGATTTAGGAAGCAGACAAAAGCTGCCATCATTATTCAGGCTCGGTGGCGATGCCACAAAGCTTCCTCATATTTTAAGAGGCTCAAGAAAGGTACAATAACTACACAATGCAGATGGAGAGGACGTGTAGCTAGGAGAGAACTTAGGAAGCTAAAAATGACCAACCTAGAAGAAGCCAAAGCACAAGAAGTAGCAAAACTGCAGAATTCATTGAAGGAGATGCAGAACAAGGTTGATGAAACCAATGCTTTACTTGTCAAAGAGCGAGAGAATGTAAAGAAAGTTGTTGAAGAAGCACCTCCTGTTATTAAGGAAACCCAGGTTATTGTTGAAGACACACAAAAAATTGAATCATTAACAGCAGAAATGGAGAACCTAAAGACCTCACTAGAGTCAGAAAAACAGAAAGCTGATGACTTTGAAAGAAAATACAATGAAGCCCAAGCTTGTATTGAAGAAAGGGGTAAAAAATTAGAAGACACTGAGAAGAAGGTTCGTCTGCTCCAAGAATCATTGACCAGGCTAGAAGAGAAGATTACTAACTTAGAGTCCGAGAATCAGGTTCTGCGTCAACAAGCTGTGTCCATGGCACCTAACAAGTTCCTTTCAGGCCGCTCCAGATCTATTATTCAGACCCAGGATAACAATGATGTCTTGGCTTACTGGCTATCGAATGCTTCTACACTTCTCTTGTTACTCCAGCGGACACTCAAGGCAAGTGGTGCTGCTGGTATGGCTCCGCAACGCCGTCGTTCTTCATCAGCAACCCTATTTGGGAGGATGACACAAAGTTTCCGTGGAACTCCATCAGGAGTCAATCTTTCCCTGATCAATGGTAGCAGTGGAGTAGATACATTACGTCAAGTTGAAGCCAAGTACCCAGCCCTTCTATTCAAACAGCAGCTTACAGCATATGTGGAAAAGATATATGGAATGATTCGAGATAACTTGAAGAAAGAAATTTCACCGTTGCTTGGGTTATGCATCCAGGCACCAAGAACGTCCAGAGCAAGCTTGGTTAAAGGGGCACGCTCTGTTGCAAACACTGAAGCCCAGCGGGCTTTGATTGCTCACTGGCAGGGGATAGTTAAGAGCCTTGGAAACTTTCTGAATACCTTAAAAGCAAATCATGTTCCTCCATTTTTGGTTCGTAAGGTGTTCACTCAAATATTTTCTTTCATCAATGTCCAACTATTCAATAGTCTTCTTTTAAGACGTGAGTGCTGCTCATTCAGCAATGGGGAATATGTCAAAGCTGGTTTGGCTGAATTGGAGCACTGGTGTTATAAAGCAACAGATGAGTATGCAGGTTCAGCCTGGGATGAGCTCAAACATATTAGACAGGCCATTGGGTTTCTGGTCATACATCAGAAACCAAAGAAAACGCTAGATGAAATAAGTCATGACCTGTGCCCAGTCCTTAGTATACAGCAGCTATATCGGATTGGCACTATGTACTGGGATGACAAGTATGGCACACATAGCGTGTCCCCTGATGTAATATCCAATATGAGAGTGTTGATGACTGAAGACTCAAATAATGCAGTTAGTAATTCTTTCCTGCTGGATGATGATTCAAGCATTCCATTTTCTGTCGATGACATATCAAAGTCAATGGAGCAAATAGATATCGCGGATATTGAGCCCCCACCGCTCATTCGTGAGAACTCTGGCTTTAGTTTCTTGTTGCCACGTATAGATTGA 3981 0.414 MGTPVNIIVGSHVWIEDPDVSWIDGVVSKINGTDAEIETTNGKKVAKLSKIYPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAINPFQRLPHLYDAHMMQQYKGAPFGELSPHVFAVADVAFRAMVIEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQINDPERNYHCFYLLCAAPQEEIEKYKLGHPKSFHYLNQSNCYELVDSSDAREYLATRRAMDVVGISQKEQEAIFRVVAAILHLGNIAFAKGKDVDSSVPKDDKAKFHLATTAELLMCDADALKDALCKRVMITPEEVIKRSLDPQSAAISRDGLAKTIYSRLFDWLVDKINNSIGQDPNSKSLIGVLDIYGFESFKTNSMFPKSTHETFANKLYQTFKNHKRFIKPKLSRTDFTIAHYAGEVLYQSDQFLDKNKDYVVPEHQDLLGASKCSFVAGLFPPLPEETSKSSKFSSIASRFKLQLQSLMETLNSTEPHYVRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRPFFEFVNRFGLLAPEAMEGNIEEKVVCQKILEKMGLKGYQIGQTKIFLRAGQMAELDARRAQVLSTAAKVIQRRIRTHQARNHYLALRMTTIFMQSLCRGRLACELFDNMRKVAAAKKIQKNIRRYEARKAYKRLHAAGLTLQTALRAIAARKEFRFRKQTKAAIIIQARWRCHKASSYFKRLKKGTITTQCRWRGRVARRELRKLKMTNLEEAKAQEVAKLQNSLKEMQNKVDETNALLVKERENVKKVVEEAPPVIKETQVIVEDTQKIESLTAEMENLKTSLESEKQKADDFERKYNEAQACIEERGKKLEDTEKKVRLLQESLTRLEEKITNLESENQVLRQQAVSMAPNKFLSGRSRSIIQTQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGTPSGVNLSLINGSSGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGARSVANTEAQRALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRIGTMYWDDKYGTHSVSPDVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDISKSMEQIDIADIEPPPLIRENSGFSFLLPRID 1326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0268 1326 Gene3D Myosin VI head, motor domain, U50 subdomain 501 534 - -
Dere02g0268 1326 Gene3D Myosin VI head, motor domain, U50 subdomain 311 421 - -
Dere02g0268 1326 Pfam Myosin N-terminal SH3-like domain 9 45 IPR004009 GO:0003774|GO:0005524|GO:0016459
Dere02g0268 1326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 715 813 IPR027417 -
Dere02g0268 1326 SUPERFAMILY Tropomyosin 812 953 - -
Dere02g0268 1326 FunFam unconventional myosin-Va 718 766 - -
Dere02g0268 1326 Gene3D - 443 556 - -
Dere02g0268 1326 PANTHER MYOSIN 53 445 - -
Dere02g0268 1326 SMART iq_5 715 737 IPR000048 GO:0005515
Dere02g0268 1326 SMART iq_5 667 689 IPR000048 GO:0005515
Dere02g0268 1326 SMART iq_5 763 785 IPR000048 GO:0005515
Dere02g0268 1326 SMART iq_5 786 808 IPR000048 GO:0005515
Dere02g0268 1326 SMART iq_5 738 760 IPR000048 GO:0005515
Dere02g0268 1326 Gene3D Kinesin motor domain 64 437 IPR036961 -
Dere02g0268 1326 ProSiteProfiles IQ motif profile. 764 793 IPR000048 GO:0005515
Dere02g0268 1326 CDD MYSc_Myo11 75 653 IPR036018 -
Dere02g0268 1326 Pfam Myosin head (motor domain) 63 444 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere02g0268 1326 Coils Coil 812 850 - -
Dere02g0268 1326 SMART MYSc_2a 56 666 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere02g0268 1326 ProSiteProfiles Myosin motor domain profile. 61 665 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere02g0268 1326 Pfam IQ calmodulin-binding motif 671 688 IPR000048 GO:0005515
Dere02g0268 1326 Pfam IQ calmodulin-binding motif 789 808 IPR000048 GO:0005515
Dere02g0268 1326 Pfam IQ calmodulin-binding motif 718 737 IPR000048 GO:0005515
Dere02g0268 1326 Pfam IQ calmodulin-binding motif 765 785 IPR000048 GO:0005515
Dere02g0268 1326 Gene3D - 600 663 - -
Dere02g0268 1326 Pfam DIL domain 1145 1248 IPR002710 -
Dere02g0268 1326 Coils Coil 868 951 - -
Dere02g0268 1326 Gene3D - 251 309 - -
Dere02g0268 1326 FunFam Myosin heavy chain 251 306 - -
Dere02g0268 1326 ProSiteProfiles IQ motif profile. 716 742 IPR000048 GO:0005515
Dere02g0268 1326 PRINTS Myosin heavy chain signature 91 110 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere02g0268 1326 PRINTS Myosin heavy chain signature 195 222 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere02g0268 1326 PRINTS Myosin heavy chain signature 148 173 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere02g0268 1326 PRINTS Myosin heavy chain signature 428 456 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere02g0268 1326 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 56 IPR004009 GO:0003774|GO:0005524|GO:0016459
Dere02g0268 1326 ProSiteProfiles Dilute domain profile. 958 1269 IPR002710 -
Dere02g0268 1326 FunFam unconventional myosin-Va 767 814 - -
Dere02g0268 1326 Gene3D Kinesin motor domain 557 595 IPR036961 -
Dere02g0268 1326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 718 IPR027417 -
Dere02g0268 1326 Gene3D - 766 815 - -
Dere02g0268 1326 Gene3D - 718 765 - -
Dere02g0268 1326 Gene3D - 667 717 - -
Dere02g0268 1326 CDD MyosinXI_CBD 966 1292 IPR037975 GO:0007015
Dere02g0268 1326 ProSiteProfiles IQ motif profile. 668 695 IPR000048 GO:0005515
Dere02g0268 1326 FunFam Myosin 2 311 429 - -
Dere02g0268 1326 ProSiteProfiles IQ motif profile. 787 816 IPR000048 GO:0005515
Dere02g0268 1326 SMART DIL_2 1144 1251 IPR002710 -
Dere02g0268 1326 ProSiteProfiles IQ motif profile. 739 768 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0268 Dere-ChrDere02 2681279 2694727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0268 1 970 Myosins gene family AT1G54560 57.038 0.0 1116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0268 02 2681279 2694727 Dere02g0873 02 8278651 8297245 CCT
Dere02g0268 02 2681279 2694727 Dere02g0268 02 2681279 2694727 ECH