LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere02g0251	ATGGATGGGGTGTTTTCAGTGGATGAAATCGCCGATCACCTCTGGTCACCGCCGATACCCACGGGGACTCATGAACCATCCACGATGAACCGAAGCGCCTCCGAGTGGGCCTTCCAGCGCTTTCTTCAGGAAGCTTCTATTCCCTCTCCGACGTCTCCGCCTTCCTCTTCCTTCCCTCCTCACCCAAACGATGACGTTCCCCTTCACATCAAGGATCAACCCAAGCAGGATCCCACCCCGACTACAGGGGCCACGCCGCTTCAGAACAATGGTCCCGTTATGGCCAATGGGCCTCCTCCTCCTCCTCCTCCTCCTCCCCCGCCAATTCTTGACCTTCCCCTTGATTCCGACGACTATCAGGCTTACCTCAAGAGCAAACTCAATCTTGCCTGCGCTGCGGTCGCCTCTTCTCGGGGATCTTTAATAAAATCTCAAGATTCAGCTACTTTGGTTGAGAGTGGATCACAGGCTTCTAATTCTTCTCAAGTTGGATCTCAGGCCCCTTTTAAAGGATCTGGTCCATCTGGAAATGATTCATCTAAATTACTAGATAAAGATGCCGTTGGGGTTCTTTCCTTGCCTGCAATGCAGAAGAAACCTGCAGTTGCAAACAAGCCAACAACAAGTGGATCATCAAGGGAACAGTCAGATGACGACGATATTGAGGGAGAGACTGAGATGACTGAAAATATGGACCCTGCTGATGCAAAACGAGTAAGGAGGATGCTTTCCAATAGGGAGTCAGCTAGACGTTCAAGGAGAAGAAAGCAAGCTCATTTAACTGAGCTCGAGACTCAGGTTTCTCAATTAAAAGTAGAAAATTCATCCTTGTTAAAGCGTCTTACTGACGTAAGCCAGAAATTCAATGAATCTGGTGTTGACAACAGAGTGTTGAAAGCTGACATTGAAACATTAAGAGCAAAGGTGAAGATGGCTGAAGAGACTGTCAAAAGAATTACTGGATTGAACCCAATGTTTCAGATGTCATCAATGGGAATGCCTTCATTTGATGGGAGCCCTTCTGACACATCAGTAGATGCAGCTGTTCCTGTGCAGGATGACCAAACTCATCACTTTTATCAACCTACTTCTAATACTAATTTGGCCAGTCATGATCTGAGAGTGAACAATGGATTGGGAGATGTTTGTTCAAATGAAAATGGGCAGCAGAGTGGTGCATCAGTGGTAGCTGGGAACAAGTTGGGACGAACAGCTTCGCTTCAGAGGGTGGCTAGCCTGGAACATCTTCAGAAGAGAATTCGTGGTGGTGCAGATACATCTGGACCTCCTTCCAGTGGAGAGCATTAG	1308	0.4771	MDGVFSVDEIADHLWSPPIPTGTHEPSTMNRSASEWAFQRFLQEASIPSPTSPPSSSFPPHPNDDVPLHIKDQPKQDPTPTTGATPLQNNGPVMANGPPPPPPPPPPPILDLPLDSDDYQAYLKSKLNLACAAVASSRGSLIKSQDSATLVESGSQASNSSQVGSQAPFKGSGPSGNDSSKLLDKDAVGVLSLPAMQKKPAVANKPTTSGSSREQSDDDDIEGETEMTENMDPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLKVENSSLLKRLTDVSQKFNESGVDNRVLKADIETLRAKVKMAEETVKRITGLNPMFQMSSMGMPSFDGSPSDTSVDAAVPVQDDQTHHFYQPTSNTNLASHDLRVNNGLGDVCSNENGQQSGASVVAGNKLGRTASLQRVASLEHLQKRIRGGADTSGPPSSGEH	435

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere02g0251	435	MobiDBLite	consensus disorder prediction	138	179	-	-
	Dere02g0251	435	Pfam	bZIP transcription factor	236	285	IPR004827	GO:0003700\|GO:0006355
	Dere02g0251	435	MobiDBLite	consensus disorder prediction	93	112	-	-
	Dere02g0251	435	CDD	bZIP_plant_GBF1	238	289	IPR045314	GO:0003700\|GO:0006355
	Dere02g0251	435	FunFam	BZIP transcription factor	235	286	-	-
	Dere02g0251	435	PANTHER	BASIC LEUCINE ZIPPER 63	1	424	-	-
	Dere02g0251	435	MobiDBLite	consensus disorder prediction	134	237	-	-
	Dere02g0251	435	MobiDBLite	consensus disorder prediction	75	92	-	-
	Dere02g0251	435	Coils	Coil	246	280	-	-
	Dere02g0251	435	MobiDBLite	consensus disorder prediction	1	117	-	-
	Dere02g0251	435	Pfam	Basic leucine-zipper C terminal	304	424	IPR020983	-
	Dere02g0251	435	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	240	255	IPR004827	GO:0003700\|GO:0006355
	Dere02g0251	435	MobiDBLite	consensus disorder prediction	21	51	-	-
	Dere02g0251	435	Coils	Coil	295	322	-	-
	Dere02g0251	435	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	98	108	-	-
	Dere02g0251	435	Gene3D	-	236	290	-	-
	Dere02g0251	435	SMART	brlzneu	233	297	IPR004827	GO:0003700\|GO:0006355
	Dere02g0251	435	SUPERFAMILY	Leucine zipper domain	237	286	IPR046347	GO:0003700\|GO:0006355
	Dere02g0251	435	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	235	290	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere02g0251	Dere-ChrDere02	2557238	2561851	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere02g0251	1	371	bZIP Transcription Factor Family	AT4G02640	40.104	5.51e-50	172

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Dere02g0251		bZIP_C	6.6e-41	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere02g0251	02	2557238	2561851	Dere02g0251	02	2557238	2561851	CCT
	Dere02g0251	02	2557238	2561851	Dere02g0251	02	2557238	2561851	ECH