Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0244 ATGTTTCTTGATCTTAGTCATCCCCCAATTCCTCTAATTGATAGCTCACAGTACTATGGCGTCCCGCCTGTTCTGGTTGTACGGCGGAACAGTGTTCAACCGACATCCTCCACAATTACTGTTTATTTCCTATTGGAAATATCTTGGTCCCATTTTTTTGCCGACAAAATGGAATATAGAAATCATTTTGTAGTGGAGAAAATTGCAGAAGGAGAGGAAAATTTTATTATTGATCACATGGAGCAGTACGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGCTCAGCTCTTCTTGTGAGGCATAAGCACGAGAAGAAAAAATATGTGCTTAAGAAAATTCGCCTTGCTCGCCAAACTGAGCGGTCTCGTAGATCTGCACATCAAGAGATGGAGCTTATCTCTAAATTAAGAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTAGAAAAGGGGTGCTATGTGTGCATTATTATAGGTTATTGTGAGGGCGGAGATATGGCAGAAGCTATAAAGAAGGCTAATGGTGTTCTTTTTCCTGAGGAGAAACTTTGTAAGTGGCTAGTTCAACTTCTTATGGCTCTTGACTACTTACACCTGAACCATATCCTTCATCGTGATGTCAAGTGTTCAAATATATTTTTGACAAAAGATCGAGACATACGCCTTGGTGATTTTGGACTCGCCAAAATGTTGACTTCAGATGATTTTGCTTCCTCTGTTGTCGGAACTCCTAGTTACATGTGCCCTGAGCTCCTTGCTGATATTCCTTATGGGTCTAAATCTGATATTTGGTCCTTGGGATGCTGTATATATGAAATGACAGCTCATAAGCCTGCATTTAAAGCATTTGATATACAAGCGCTAATCAACAAGATTAACAAGTCCATAGTGGCTCCACTTCCAACAAAGTATTCCGGGGCATTTCGAAGTCTCGTTAAAAGCATGCTGCGGAAAAATCCTGAGTTTAGACCTAGTGCTGCGGAGCTGCTAGGGCACCGGCATCTTCAATCTTATGTTCACAAGATCCATCTCAAACTCAATAGCCCCAGGCGAAGTACATTACCAGTTCATTGGCCAGAATCTAACTGCATAAAGAAAACTAGATTTTTGGAGTCAGAAGATGATCCGGTTTCCATCTACAGGGATAAGCGACATTCTTTTAGCAACGATCGTGCTCTTAATCCTAGCATATCTGGAGCTGAGCAAGATTCAGTATGCTCTACCCTAGAAATAGATTGTACCCCGGATCATTTGAATCAACGGTTGGCAGAACTGTGTATTGGAGATAGCCTTGAGGTGAAGTCAGTCCGTAAGCCTGTTGTTTCAAGGAGTATTGCCAAGACTCCAAGACTTACCTCCATTAAGGCATCTGCCACCCCCAAGAAATCAGTGGAGCCCAAAAAGAATCGTGAGTCGCTTCCTGCTTCGCGCAAAGCCAGACAATCAGTCCATACAACTCGCAGAGTATCATTTCCTCTGCGTACAAGCGGTTCTATTCAACAGTCTCATCACAGACCTGGTATTGGTTTACTTGACCATGTAAAATCTCCAGATATTTCAGTGAACGCCCCCAGAATTGATAAGATAGCTGAATTCCCATTAGCGTCATATGAGGATCCATTGTTTCCCATCAATAGAACTTCATCAACCTCAGCACAGGGTTCCGCCGGCTCCCCACCTTATGGTGATCCATCAATCATGAAAGATAAATGCACAGTTCAGGTATGTGATAGAGCCTCTGTTAAGTTTCGGTTGACAGATGCTTGGCAGGGAATCAAGCTCAACACATTCCAGGAAAATGCTGAGGATAAAAGTGGCTCCTCTGATCAAAATGCTACTGCTGGAGCATCAAGCCGTGCCTCTTCAGACATGCGTCGCCGTCAGTTTGACACTACATCATACCAACAAAGGGCTGAAGCCTTGGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTACAAGGCGAAAGGTATGACGAACTGGGGGTTTTATTGAAGCCATTTGGGCCAGGGAAGGTCTCTCCGAGGGAAACTGCTATCTGGTTGAGTAAGAGCTTTAAAGAGAACACTCTCAACCGGGGAGAATCCCTGTAA 2097 0.4316 MFLDLSHPPIPLIDSSQYYGVPPVLVVRRNSVQPTSSTITVYFLLEISWSHFFADKMEYRNHFVVEKIAEGEENFIIDHMEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFPEEKLCKWLVQLLMALDYLHLNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDFASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTAHKPAFKAFDIQALINKINKSIVAPLPTKYSGAFRSLVKSMLRKNPEFRPSAAELLGHRHLQSYVHKIHLKLNSPRRSTLPVHWPESNCIKKTRFLESEDDPVSIYRDKRHSFSNDRALNPSISGAEQDSVCSTLEIDCTPDHLNQRLAELCIGDSLEVKSVRKPVVSRSIAKTPRLTSIKASATPKKSVEPKKNRESLPASRKARQSVHTTRRVSFPLRTSGSIQQSHHRPGIGLLDHVKSPDISVNAPRIDKIAEFPLASYEDPLFPINRTSSTSAQGSAGSPPYGDPSIMKDKCTVQVCDRASVKFRLTDAWQGIKLNTFQENAEDKSGSSDQNATAGASSRASSDMRRRQFDTTSYQQRAEALEGLLEFSARLLQGERYDELGVLLKPFGPGKVSPRETAIWLSKSFKENTLNRGESL 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0244 698 MobiDBLite consensus disorder prediction 463 479 - -
Dere02g0244 698 CDD STKc_Nek 82 332 - -
Dere02g0244 698 Gene3D Transferase(Phosphotransferase) domain 1 163 354 - -
Dere02g0244 698 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 80 648 - -
Dere02g0244 698 MobiDBLite consensus disorder prediction 547 567 - -
Dere02g0244 698 MobiDBLite consensus disorder prediction 602 624 - -
Dere02g0244 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Dere02g0244 698 SUPERFAMILY Protein kinase-like (PK-like) 80 383 IPR011009 -
Dere02g0244 698 FunFam Serine/threonine-protein kinase Nek3 165 411 - -
Dere02g0244 698 MobiDBLite consensus disorder prediction 602 635 - -
Dere02g0244 698 MobiDBLite consensus disorder prediction 454 491 - -
Dere02g0244 698 Pfam Protein kinase domain 83 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g0244 698 SMART serkin_6 83 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g0244 698 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Dere02g0244 698 FunFam Serine/threonine-protein kinase Nek2 80 162 - -
Dere02g0244 698 Gene3D Phosphorylase Kinase; domain 1 59 162 - -
Dere02g0244 698 ProSiteProfiles Protein kinase domain profile. 83 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0244 Dere-ChrDere02 2506767 2512506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0244 89 339 MAP Kinase Kinase Kinase AT1G53570 31.641 4.90e-35 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Dere02g0244 Pkinase 2.9e-63 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0244 02 2506767 2512506 Dere02g0244 02 2506767 2512506 CCT
Dere02g0244 02 2506767 2512506 Dere02g0244 02 2506767 2512506 ECH