Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0243 ATGTTCAACGGAGTCCCAGGAGCAGTTCCACCAATTCATAGCTCCAAGAAGCACACTTCCTCTTCACCTGTCTCTTTCCCTCCCTTTGATGCTTACAACCCTTCTCATCATCACTTGTCACTCCCACCACCACCATCAAATCTCTTGCACCCACTGCCCCACAAGGATGAACAACACAAGCAGGAAGAAAATAGCATGAACCTGCACACTAATGCAAGACAAAGACAATTAGGCGAGCATCAGCTGGAGCTGATTGATTCCTGGACCAACGATGAAATGATTGCTCTTTTGAGGATCAGATCTAGCATGGAAACTTGGTTCCCTGACCTCACTTGGGAACATGTTTCAAGGAAGCTAGCAGAGGTCGGAATTAAGAGGAGTGCAGACAAGTGCAAGGAGAAGTTCGAAGAAGAGACTAGATTCTTCAACAACAACATTCATTACACCAAGGACGATAATTACCGCTTTATTAGTGAGCTCGAACAGCTTTATCAACAACAAGAAGCAAATCAAATTCCTGAGGATGTGGTTGGGTCTCAACGGAGCAGACAGATGCTGGAAAAGCCAACCCAGGAACAACACAGGAAGATGGGTCACGCATTAGAAGAGGGGTCGGGCTATAACGCCGCCTCATTGACCGAACAATACGAGGAGAGTGTGAAAACGGTTATAAAATCAAAGCACAGGAAGAGAAAGAGGCATGACAAGTTTGAGATGTTGAAGGGTTTTTGTGAGACCATTGTGAACAAAATGATGGCACAACAAGAAGAAATGCAGAAGAAGCTCCTGGAGGGCATGCTTAAAAGAGACCAAGAGAAGTTCGCAAGAGAGGAAGCTTGGAAGAAGCAAGAAATAGATAGAATGAACAGGGAGCTCGAAATGATGGCGAAAGAGCAGGCTATTGCGGGCGATAGACAAGCCACCATAATGGAGTTCTTGAAGAAGTTTTCAGACCAATGCCAACAAATCAAAACGGTATCAAACGGTTCGGACCCAAATTCTCTTACTTCTTCCTCGTTGAACTCACAAAACCCTAACCCTTCTTGTAATTACATTGAGAAGAACATTCCTGAGCCGCCGCCGCCGCCTATTTCTACTACTGTGGTTCTTAATTACGAAGATACAACAGATGAAAACCCTCATAGTTCCAGCGTGTTTCCTTCTTTATCTAATGGTACTCTAGTTCCCCATAACCCGAACTCTCTCATTACCCAGTACAATCCATCGCCAGCCCAATCAGTTTCGACGCATAAAACCTGCTCGAATAATTCTATTTCCACCGACAAGGATGAGGTTGGAAGAAGATGGCCAAGAGAGGAAGTGTTGGCTCTCATAAACCTGAGGTGCAGTTTGAATAATAACAGTAATAATGAAGAGAAAGATGGAGGAAGCAGGATTCCTCTGTGGGAGAGAATATCGCAAGGGATGTGGGAGTTGGGGTACAAGAGAAGCGCCAAGAGGTGCAAGGAGAAGTGGGAGAACATAAACAAGTACTTCAGAAAAACAAAGGATGTTAGTAAGAAGAGGTCGCTTGATTCTAGAACCTGTCCCTACTTCCATCAACTCACTACTTTGTATAGTCAAGGCAAACTGATGAATTCACAGTCTCATGAGAACCTGGAAAATCGCTCACCACATACTTCTCATCAACTGGACTCTCATGCATCAGGTGACGACAAAACTTTGATTTAA 1692 0.4439 MFNGVPGAVPPIHSSKKHTSSSPVSFPPFDAYNPSHHHLSLPPPPSNLLHPLPHKDEQHKQEENSMNLHTNARQRQLGEHQLELIDSWTNDEMIALLRIRSSMETWFPDLTWEHVSRKLAEVGIKRSADKCKEKFEEETRFFNNNIHYTKDDNYRFISELEQLYQQQEANQIPEDVVGSQRSRQMLEKPTQEQHRKMGHALEEGSGYNAASLTEQYEESVKTVIKSKHRKRKRHDKFEMLKGFCETIVNKMMAQQEEMQKKLLEGMLKRDQEKFAREEAWKKQEIDRMNRELEMMAKEQAIAGDRQATIMEFLKKFSDQCQQIKTVSNGSDPNSLTSSSLNSQNPNPSCNYIEKNIPEPPPPPISTTVVLNYEDTTDENPHSSSVFPSLSNGTLVPHNPNSLITQYNPSPAQSVSTHKTCSNNSISTDKDEVGRRWPREEVLALINLRCSLNNNSNNEEKDGGSRIPLWERISQGMWELGYKRSAKRCKEKWENINKYFRKTKDVSKKRSLDSRTCPYFHQLTTLYSQGKLMNSQSHENLENRSPHTSHQLDSHASGDDKTLI 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0243 563 FunFam Trihelix transcription factor GT-2 88 144 - -
Dere02g0243 563 MobiDBLite consensus disorder prediction 408 432 - -
Dere02g0243 563 FunFam Trihelix transcription factor GT-2 436 501 - -
Dere02g0243 563 MobiDBLite consensus disorder prediction 324 348 - -
Dere02g0243 563 ProSiteProfiles Myb-like domain profile. 428 496 IPR001005 -
Dere02g0243 563 MobiDBLite consensus disorder prediction 1 64 - -
Dere02g0243 563 Gene3D - 88 143 - -
Dere02g0243 563 Gene3D - 436 501 - -
Dere02g0243 563 CDD GT1 434 503 - -
Dere02g0243 563 MobiDBLite consensus disorder prediction 14 28 - -
Dere02g0243 563 MobiDBLite consensus disorder prediction 536 563 - -
Dere02g0243 563 MobiDBLite consensus disorder prediction 408 427 - -
Dere02g0243 563 Pfam Myb/SANT-like DNA-binding domain 86 159 IPR044822 -
Dere02g0243 563 Pfam Myb/SANT-like DNA-binding domain 434 524 IPR044822 -
Dere02g0243 563 ProSiteProfiles Myb-like domain profile. 87 139 IPR001005 -
Dere02g0243 563 MobiDBLite consensus disorder prediction 542 563 - -
Dere02g0243 563 Coils Coil 253 273 - -
Dere02g0243 563 PANTHER FI21293P1 40 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0243 Dere-ChrDere02 2498876 2501024 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0243 435 528 Trihelix Transcription Factor Family AT1G76890 61.702 5.48e-31 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere02g0243 Myb_DNA-bind_4 2.4e-18 CL0123