Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0174 ATGGCTAATGCCAAAGACCAGAGAGATTATTGTCTATGGGACATTCAAAAGAGTTTTGCTCACAAGCCAAAGAAGGTCCCTGTCAATGATGCTTCCAATGTGAAAAAACCACGAGGCTCTTTGTTTTCTTCCTCTGCTTCCACGCAAGAATTGAGAGATTTGAGCTTGGAAAACCAGAAAAAAGACTCTTCATCTCCCAAAGGAGTTTTAGAAGCATGCGTTAATGGCTTTGATTGTCCACCATCACCTGAATTAGAGACAGGTTGTTCTAATTCGAAGATATTATTTCAGTGGAGCAAGATTTTTAAACAGGCCGAAATAAGATCATTTAAGCGTCTTACGTCCTTTCCTCCTATTGGTGTGCCAAAGATAACAAAAGGGAAAAGCAGGAGCGATAGAGAAAATCCTGTTCTAAGTAATATACACAGCTTCAGATCTTCCTTGGTCAATTTCAGCCTCGCTGACCTGAGAAATGCAACCAACAATTTTAGCAATGAGAATATAATTGGAAGGGGTGGTTCTTCTGAAGTGTACAAGGGTCGTCTGCAAGATGGACAACTAATAGCTGTAAAGAGACTGACTAAAGGGACCCCAGATGAGAGGACAGCGAGCTTTCTATCTGAGCTAGGTATTATGGCTCATGTTGACCATCCTAATACTGCCAAGCTTATTGGATGTGGTGTGGAAGGAGGAATGCACCTTGTCTTCCAATTATCTTCTTTGGGAAGTTTAGGATCTCTTCTTCATGGTTCAAAAGATAAGAAATTAGACTGGAGTAGAAGGTATAAGATTGCCCTGGGAATAGCTGATGGTCTTCTCTACCTGCATGAGAGTTGTCCCAGACGAATCATTCATAGAGACATTAAGGCAGAGAATATTCTACTCACGAAAAACTTTGAGCCACAGATTTGTGATTTTGGGCTGGCAAAGTGGTTACCGAAACAATGGACTCACCATAATGTATCAAAATTTGAAGGCACATTTGGGTATTTTGCTCCTGAATATTTCATGCATGGCATAGTGGACGAGAAAACCGATGTTTATTCTTTCGGGGTTCTACTTCTGGAGCTTATAACTGGGCGCCAAGCTTTGGATCATCTGCAGCAGAGTGTCGTCATATGGGCGAAGCCTTTGCTAGACTCTAATGATAAGGAAGACCTCGTTGATCCTTCTCTTGCTGGTATTTATGACCCAGAACAAATGGATTGTGTTATTTTGACAGCATCTTTGTGTGTTGAGCAGTCCCCTGCCTTTCGTCCCCGCATGAGTCAGGTTGCAACCCTCCTAAGAGGTGAAGAGTGTGCCCTGGAATCTGCAAAAGCAAGCCAAAGCAGGTCTCTCCTAAGAACGTACTCAGAAGAGCTACTTGATGCTCAAGAATACAACTCTACAAAATATCTAAATGATCTCAGTAGACATAGGCAGGTTGCTTTGGGTTCTTGA 1443 0.422 MANAKDQRDYCLWDIQKSFAHKPKKVPVNDASNVKKPRGSLFSSSASTQELRDLSLENQKKDSSSPKGVLEACVNGFDCPPSPELETGCSNSKILFQWSKIFKQAEIRSFKRLTSFPPIGVPKITKGKSRSDRENPVLSNIHSFRSSLVNFSLADLRNATNNFSNENIIGRGGSSEVYKGRLQDGQLIAVKRLTKGTPDERTASFLSELGIMAHVDHPNTAKLIGCGVEGGMHLVFQLSSLGSLGSLLHGSKDKKLDWSRRYKIALGIADGLLYLHESCPRRIIHRDIKAENILLTKNFEPQICDFGLAKWLPKQWTHHNVSKFEGTFGYFAPEYFMHGIVDEKTDVYSFGVLLLELITGRQALDHLQQSVVIWAKPLLDSNDKEDLVDPSLAGIYDPEQMDCVILTASLCVEQSPAFRPRMSQVATLLRGEECALESAKASQSRSLLRTYSEELLDAQEYNSTKYLNDLSRHRQVALGS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0174 480 SMART serkin_6 163 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g0174 480 SUPERFAMILY Protein kinase-like (PK-like) 141 429 IPR011009 -
Dere02g0174 480 Gene3D Phosphorylase Kinase; domain 1 124 237 - -
Dere02g0174 480 ProSiteProfiles Protein kinase domain profile. 163 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g0174 480 Gene3D Transferase(Phosphotransferase) domain 1 240 451 - -
Dere02g0174 480 MobiDBLite consensus disorder prediction 24 47 - -
Dere02g0174 480 PANTHER OS08G0249100 PROTEIN 44 473 IPR046958 -
Dere02g0174 480 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 240 443 - -
Dere02g0174 480 Pfam Protein tyrosine and serine/threonine kinase 166 427 IPR001245 GO:0004672|GO:0006468
Dere02g0174 480 ProSitePatterns Protein kinases ATP-binding region signature. 169 191 IPR017441 GO:0005524
Dere02g0174 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 283 295 IPR008271 GO:0004672|GO:0006468
Dere02g0174 480 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 139 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0174 Dere-ChrDere02 1646082 1649595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0174 143 435 Receptor kinase-like Gene Family AT1G53420 42.053 2.51e-68 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Dere02g0174 PK_Tyr_Ser-Thr 1.3e-42 CL0016