Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0159 ATGTGTCTCCCTGAGGGAGAGAGAGACTGCGAGACCACAATGGCGCTTGAAGCAGTGGTGTATCCTCAAGAATACCCATTTGGGTATGGTGGAGGCAAGGACTTCTATGGCCACTGGGCCTATAGTGATGACTTCAACCTCACGAAACAAGAAGAGCAAGCCTCCCTCAATTTTCTAAACAACCAAACAGAAAATTATGGCTACGGAGATTGGAGTATTTGCTCTTCTTCTCCCCCATCCATGTTACCTCACTTGAATGAACTGCATCTCCCGAATCCCGCATCCTCCGACACTAGTGTTAACCCAGCACCATATGAACCCCACAATTTCGATTCCTCAAATTGTCGTCCTAAGAGACGCAGAGCCAAAACCCGGAAGAACAAGGAGGAAATTGAGAATCAGAGAATGACTCACATTGCAGTGGAGCGCAATCGAAGAAAGCAAATGAACGAGTATCTCTCTGTGCTTCGCTCTCTCATGCCTGACTCCTACGTCCAAAGGGGCGATCAAGCTTCAATAATAGGAGGCGCTATTAATTTTGTGAAGGAGCTGGAGCAGAGGCTGCAATTTCTTGGGGGTCAAAATGAATCCGAGGCCAAATCTCACAATATGCCCTTCTCCGAGTTCTTCACCTTTCCCCAATATTCCACAAGCTCGAGTGGGTGCGAGAGTTCAATGGGGGTAGGTGGAGACAAAGTAGGAGACTCATCATCAGAGTCGTGTATTGCAGACATAGAAGTGACAATGGTAGAGAGCCATGCAAATCTGAAAATAAGGTCGAGGAAGAGGCCAAAGCAGCTGTTGAAGATGGTGTCTGCGTTGCACACCATGCGTCTCACCATCTTGCATCTCAATGTCACTACCACTGCTGATATTGTCCTCTATTCTATCAGTGTCAAGTTAGAAGAAGAATGCAAGCTGGGATCAGTGGACGAGATAGCAACAGCTGTGTACCAAACGTTGGAAAGGATTCAACAAGACTCTACGCTGAATCAAGATCCCAACTTGAACTAA 1014 0.4684 MCLPEGERDCETTMALEAVVYPQEYPFGYGGGKDFYGHWAYSDDFNLTKQEEQASLNFLNNQTENYGYGDWSICSSSPPSMLPHLNELHLPNPASSDTSVNPAPYEPHNFDSSNCRPKRRRAKTRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQFLGGQNESEAKSHNMPFSEFFTFPQYSTSSSGCESSMGVGGDKVGDSSSESCIADIEVTMVESHANLKIRSRKRPKQLLKMVSALHTMRLTILHLNVTTTADIVLYSISVKLEEECKLGSVDEIATAVYQTLERIQQDSTLNQDPNLN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0159 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 184 IPR011598 GO:0046983
Dere02g0159 337 SMART finulus 139 190 IPR011598 GO:0046983
Dere02g0159 337 Pfam Helix-loop-helix DNA-binding domain 134 185 IPR011598 GO:0046983
Dere02g0159 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 206 IPR036638 GO:0046983
Dere02g0159 337 Gene3D - 117 201 IPR036638 GO:0046983
Dere02g0159 337 PANTHER MAX DIMERIZATION, MAD 76 327 - -
Dere02g0159 337 MobiDBLite consensus disorder prediction 105 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0159 Dere-ChrDere02 1480810 1481994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0159 14 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.984 3.93e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere02g0159 HLH 4.7e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0159 02 1480810 1481994 Dere02g0159 02 1480810 1481994 CCT
Dere02g0159 02 1480810 1481994 Dere02g0159 02 1480810 1481994 ECH