Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0153 ATGGAATCGTCTCATTCCATTCTCATTAAATTAATATTTGTGAAAAGTAGGAAGAAAGGGAAGAAGAATCGTGCACCTGCATTAGCTGCAGCTTTTAATTCATCTGGTTCGTGTGGGGGAGGCTGTAACACACGATTTGAACTTTGTGTGAGATGTTTTGCGGAGCCATGTACCTCTGAAGAGATGTACTTCTCACGTGCATACTCAGATGAGTCAATTAGGATGGATCATCAAGGTCATAGCCAGAACCCATCTATGGGGGTTGTTAGTAGTGGAGCTCAAATGCCTTATGCTTCTAACCCATACCAGCCGAACCAAATAACTGCAACACCGGGATCTGCTGTTACATCAGTTGGGACCATTCAATACAGTGGTCAGCCTGCTGGAGCTCAAATGGGACAACACCAACTTGCTTATCAGCATATTCACCAGCAACAACAGCAGCAACTTCAGCAACAACTCCAAACCTTTTGGGCTAATCAGTACCAAGAAATTGAGAAGGTGACTGATTTCAAGAATCACAGCCTTCCCTTGGCAAGGATCAAGAAGATAATGAAGGCTGATGAGGATGTTCGAATGATATCAGCTGAGGCGCCAGTCATATTTGCGAGGGCGTGTGAAATGTTCATTTTAGAGTTAACCTTGCGTTCGTGGAATCACACTGAAGAGAACAAAAGGAGAACACTTCAGAAGAATGATATTGCAGCAGCAATCACAAGGACTGATATCTTTGATTTCTTGGTTGACATTGTGCCCCGTGAGGACTTAAAAGATGAAGTACTTGCATCAATTCCTAGAGGGACAATGCCTGTTGCAGGGCCTGCTGATGCAATTCCTTATTGCTATATGCCACCTCAGCATGCGCCACAAGTTGGTGCAGCCGGTGTCATAATGGGTAAGCCTGTGATGGACCCAACCATGTATGCTCAACAGTCTCATCCCTACATGGCACAACAAATGTGGCCACAGCCACCAGAGCAACGACAATCATCTCCAGATCATTAG 1005 0.4488 MESSHSILIKLIFVKSRKKGKKNRAPALAAAFNSSGSCGGGCNTRFELCVRCFAEPCTSEEMYFSRAYSDESIRMDHQGHSQNPSMGVVSSGAQMPYASNPYQPNQITATPGSAVTSVGTIQYSGQPAGAQMGQHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADAIPYCYMPPQHAPQVGAAGVIMGKPVMDPTMYAQQSHPYMAQQMWPQPPEQRQSSPDH 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0153 334 SUPERFAMILY Histone-fold 143 247 IPR009072 GO:0046982
Dere02g0153 334 FunFam Nuclear transcription factor Y subunit gamma 140 253 - -
Dere02g0153 334 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 134 276 - -
Dere02g0153 334 Pfam Core histone H2A/H2B/H3/H4 136 238 IPR007125 GO:0003677
Dere02g0153 334 Gene3D Histone, subunit A 137 253 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0153 Dere-ChrDere02 1435251 1439136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0153 75 321 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.500 6.63e-89 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Dere02g0153 CBFD_NFYB_HMF 8.8e-18 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0153 02 1435251 1439136 Dere02g0153 02 1435251 1439136 CCT
Dere02g0153 02 1435251 1439136 Dere02g0153 02 1435251 1439136 ECH