Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0116 ATGTTTGATTCAGTAGCGGATAGAGAACATGAAAGCAGCGGAGCGTCAGGACCCATTTTGATTCCAAAGCGTTTCGTCTGGCCTTACGGGGGAAGAAGGGTGTTTCTGAGTGGTTCTTTCACGAGGTGGTCTGAACATATTCCTATGTCTCCGATGGAGGGATGCCCTACTGTATTTCAAGTTATTTGCAGCTTGATGCCGGGATATCATCAGTACAAATTTAATGTGGATGGTGAGTGGCGGCATGATGAGCAGCAGCCATTTGTAAGTGGGAACTATGGGGTAGTGAATACTATCTTCTTGACGAGAGAACCAGATAATTTACCTGCCATCCTTATTCCTGAGATGCCTGGAAGATCACACATGGACGTTGATAATGATGTCTTTGGGCATGTGGACGCTAATTTAAGGATGTCAGAGTCTGATCTGGAGGTCTCTCGCCACCGTATAGCTGTATTCTTGTCTACACATACTGCTTATGAGTTGCTTCCTGAGTCAGGCAAGGTCATTGCCTTCGATATCAATTTACCAGTTAAGCAAGCATTCCATGTTCTTTATGAACAGGGTGTACCTATGGCTCCTTTATGGGATTTTCACAGGAGCCAGTTCGTTGGAGTGCTTAGTGCTATGGACTTCATTCTAATATTAAAAGAGCTGGGGAATCGTGGGTCGAATTTGACTGAAGAACAACTCGAGACCCATACTATAGCAGCGTGGAAAGAGGGGAAATTACAGCAACGCAGAACAATGGACAATGGGAGATCATATCCTCAACATTTTGTTCATGCTGGGCCTCATGAGTGTCTGAAAGATGTGGCTCTGAAAATTTTGCAAAACAAGGTGGCAGCAGTTCCTATTATCCATTCTACTTCACAGGATGGTTCATATCCTCAGCTGCTACATGTTGCTTCCTTATCAGAAATACTAAAATGTATATGCAGGCACTTTAAGCATTCTTCTGGTTCCTTGCCCATTCTTCATCTACCAATTGGTTCAATACCTTTGGGTACATGGGTTCCAAAAGTTGGGGAATCAACTAGACAGCCACTTGCAATGCTTAGGCCAAATGCATCTCTTGGTGCTGCCCTGTCTCTGTTAATTCAAGCTGAAGTTAGCTCAATACCAATTGTTGATGATAATGATTCATTGCTAGACATATATTCAAGAAGTGATATTACTGCATTGGCTAAAGATAAAGCTTATGCACGGATAACTCTTGATGAAATTAGCATCCATCAGGCATTGCTTTTGGGACAAGATGCAAATTCACCTCATGGCTTTTACAATGGTCAGAGATGTCATATGTGTTTGAGGTCTGATTCATTGCATAAAGTGATGGAGCGGTTAGCTAATCCTGGGGTTAGAAGACTTGTGATTGTGGAGCCAGGCAGCAAGTGTGTGGAGGGGATTATTTCATTGAGTGATGTGTTCAGATTCTTGTTAGGCTAG 1449 0.43 MFDSVADREHESSGASGPILIPKRFVWPYGGRRVFLSGSFTRWSEHIPMSPMEGCPTVFQVICSLMPGYHQYKFNVDGEWRHDEQQPFVSGNYGVVNTIFLTREPDNLPAILIPEMPGRSHMDVDNDVFGHVDANLRMSESDLEVSRHRIAVFLSTHTAYELLPESGKVIAFDINLPVKQAFHVLYEQGVPMAPLWDFHRSQFVGVLSAMDFILILKELGNRGSNLTEEQLETHTIAAWKEGKLQQRRTMDNGRSYPQHFVHAGPHECLKDVALKILQNKVAAVPIIHSTSQDGSYPQLLHVASLSEILKCICRHFKHSSGSLPILHLPIGSIPLGTWVPKVGESTRQPLAMLRPNASLGAALSLLIQAEVSSIPIVDDNDSLLDIYSRSDITALAKDKAYARITLDEISIHQALLLGQDANSPHGFYNGQRCHMCLRSDSLHKVMERLANPGVRRLVIVEPGSKCVEGIISLSDVFRFLLG 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0116 482 ProSiteProfiles CBS domain profile. 345 403 IPR000644 -
Dere02g0116 482 Gene3D - 329 482 IPR046342 -
Dere02g0116 482 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 139 480 - -
Dere02g0116 482 SMART cbs_1 432 481 IPR000644 -
Dere02g0116 482 SMART cbs_1 168 217 IPR000644 -
Dere02g0116 482 SMART cbs_1 349 397 IPR000644 -
Dere02g0116 482 FunFam Sucrose nonfermenting 4-like protein 18 103 - -
Dere02g0116 482 Pfam CBS domain 348 393 IPR000644 -
Dere02g0116 482 Pfam CBS domain 434 481 IPR000644 -
Dere02g0116 482 CDD E_set_AMPKbeta_like_N 24 100 - -
Dere02g0116 482 Gene3D - 139 321 IPR046342 -
Dere02g0116 482 SUPERFAMILY E set domains 21 101 IPR014756 -
Dere02g0116 482 Gene3D Immunoglobulins 19 101 IPR013783 -
Dere02g0116 482 Pfam Glycogen recognition site of AMP-activated protein kinase 21 104 IPR032640 -
Dere02g0116 482 SUPERFAMILY CBS-domain pair 343 481 IPR046342 -
Dere02g0116 482 SUPERFAMILY CBS-domain pair 148 318 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0116 Dere-ChrDere02 1171868 1180286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0116 30 92 Protein tyrosine phosphatase (PTP) family AT3G52180 37.500 2.09e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0116 02 1171868 1180286 Dere02g0116 02 1171868 1180286 CCT
Dere02g0116 02 1171868 1180286 Dere02g0116 02 1171868 1180286 ECH