Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0115 ATGTCAAACATCACAAGCTGTGATAGTGGGAGCTTCTCGACAGAGAACACCAGAGAAGATGCAGTTTTTAAACGGCAGCCAGAAGCTCTGGGTCAGTTTCATAGTCCAAATTCTCTTACTTCAACTACAACTAACAGTAACGGTTCCAACACTAATTCACAACTCCCTCCCCCACCTGTTAAGAAGAGAAGAAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATTGCTCTATCACCAAACACCCTGATGGCCAGAAACCGATTCGTATGTGAAATCTGCAACAAAGGATTCCAAAGGGATCAGAATCTCCAGTTGCACCGGCGAGGCCATAACCTGCCATGGAAGCTCAAACAAAGAACGAGCACAGAAGTTCGAAAGCGGGTTTATGTTTGTCCAGAACCTTCGTGCGTCCACCATAACCCAGCTCGAGCACTAGGTGACCTTACTGGCATTAAGAAGCACTTCTCAAGAAAACATGGCGAGAAGAAATGGAAATGTGACAAGTGCTCTAAGAGATACGCCGTTCAATCCGACTGGAAAGCCCATTCTAAGATCTGCGGCACTAGGGAATACAAATGCGACTGTGGCACCATCTTCTCCAGAAAAGATAGCTTCATCACCCATAGAGCTTTCTGTGATGCGCTGGCCGAGGAGAATACCAAAGCCAATAATGAAGGACTACTGCCAAAGTTATTGGGTTCAGATTCAAACTTACAAGTCCAACATCAAATCGCAAATCTCGTTTCTTCATTACCAATAAACTCCAATTTCAATCCACAAATTGGGACATCCCAGTTTAACCATTCTGATGATATTAAGCAACCGCTATCACTTCCTCATCAGGAGCTTGTGGAAATGCCAGCAAAACCATTTAACTACATAGCTGGAAGCGTATTCACAAGAACCCTTTCGTCCAACAATTCTTGTCCTTCACTTCAACTCAATTCAAACAATTCCCTAACCATGTTCGACGAAAACGAGCACCAATCCGGTGGGTCAGCCCACATGTCGGCCACGGCATTGTTGCAAAAAGCAGCTCAAATGGGAGCAACGATGAGTAACACTAACAGCAGCGGTATGAACTCTTGCATGGCACCCCCATCTTTTGGGCATTCCTTGGGGAATAATCACAACTATATGAACAGTGGCCAACATGACATTTCTTCATCTCAGTATTTCAGTGGAAACCTTAATGGCGTTGGAATGAACGGTGTGGATATGTTCAATGCTATAATGGACCAAAGCAAGGCGTTATCAAAGATGATAGAGCAGAATAGTCGAAGCAGTAATCTTAACAACAATGGAGTTTTGCATGGGGCAATGAATGGTGGGCCAAGTAGTAAAGGAAGCGGGGATGTGATGACTCTGGACTTTTTGGGGATTGGAGGAGGAGGTGGTGGCGCACATGATGCTTTTCTATGGCGCCAAACAGGCTGA 1443 0.4511 MSNITSCDSGSFSTENTREDAVFKRQPEALGQFHSPNSLTSTTTNSNGSNTNSQLPPPPVKKRRSLPGNPDPSAEVIALSPNTLMARNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHSKICGTREYKCDCGTIFSRKDSFITHRAFCDALAEENTKANNEGLLPKLLGSDSNLQVQHQIANLVSSLPINSNFNPQIGTSQFNHSDDIKQPLSLPHQELVEMPAKPFNYIAGSVFTRTLSSNNSCPSLQLNSNNSLTMFDENEHQSGGSAHMSATALLQKAAQMGATMSNTNSSGMNSCMAPPSFGHSLGNNHNYMNSGQHDISSSQYFSGNLNGVGMNGVDMFNAIMDQSKALSKMIEQNSRSSNLNNNGVLHGAMNGGPSSKGSGDVMTLDFLGIGGGGGGAHDAFLWRQTG 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0115 480 FunFam protein indeterminate-domain 12-like 69 137 - -
Dere02g0115 480 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Dere02g0115 480 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Dere02g0115 480 MobiDBLite consensus disorder prediction 1 17 - -
Dere02g0115 480 Gene3D Classic Zinc Finger 70 136 - -
Dere02g0115 480 SMART c2h2final6 131 161 IPR013087 -
Dere02g0115 480 SMART c2h2final6 166 186 IPR013087 -
Dere02g0115 480 SMART c2h2final6 90 112 IPR013087 -
Dere02g0115 480 MobiDBLite consensus disorder prediction 1 73 - -
Dere02g0115 480 MobiDBLite consensus disorder prediction 31 58 - -
Dere02g0115 480 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
Dere02g0115 480 Gene3D Classic Zinc Finger 144 225 - -
Dere02g0115 480 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 45 463 IPR031140 -
Dere02g0115 480 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Dere02g0115 480 Pfam Zinc finger, C2H2 type 90 112 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0115 Dere-ChrDere02 1151963 1154669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0115 55 352 IDZ Gene Family AT1G03840 50.975 1.92e-112 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere02g0115 zf-C2H2 0.0048 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3211 01 46898586 46901674 Dere02g0115 02 1151963 1154669 CCT
Dere02g0115 02 1151963 1154669 Dere02g0115 02 1151963 1154669 CCT
Dere02g0115 02 1151963 1154669 Dere02g0115 02 1151963 1154669 ECH