Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0112 ATGGACCATGCTCGATCAACCTCTGGGAATGTTGAGGATAATGTAGGGATTCCAGATGATTTGCGATGCAAGCGGTCAGATGGTAAACAATGGAGATGCACTGCCATGTCCATGCCAGATAAAACAGTCTGTGAGAAGCACTATATCCAGGCAAAGAAGAGGGCAGCTAATTCTGCTATGAGAGCTAGTCTGAAGAAGGCTAAGAGAAAGTCAATAGGTGAAAGTGATATTTATCTAGAGAGCAAGAGTGAGGATTTTGACATGCCACTTGCAAGCATGAAAGTTGAACAACATTCAGCGTCTGCAAAGAATAAGGCATCAAAATATCAGTTTCGATATGCAGCAGAGACACCAACCAGGAGGACCACCTCTGTGCGTAATGCTCCAAAGCCAAATGACGATTCGCCAGATGATATTCCCCAGTATGAAGAGAATTGGACGTCTTATGAGTCACCACCTGCTTCTGGAATGGACTCATCTAGGAAAAGATCTCAAAGGAGTTTAGATGTCAATGCTACTACAGAATACTCTGATGGAAGTACGAATTCCTCTGATGACACTGGTGGGCACATTTGCCATCAATGCCGAAGGAATGACAGAGACAGAGTTATTTGGTGTCTGAAATGTGATAGGAGAGGATACTGTGAGAACTGTATATTAACATGGTACTCAAACATGTCATTGGACGAAATTCAGAGGACTTGTCCTGCCTGCCATGGCACCTGTAATTGCAGAGTTTGCGTACGTGCTGATAATTCAATAAAGGTTCGGATACGTGAGATACCTGTTCTAGATAAGTTACAGTATCTCCACTTGCTGCTGTCATCAGTACTTCCTGTGGTAAAGCAGATCCATCGTGAGCAGTGTTTTGAAGTTGAACTTGAAAAGTTGCGTGGGATTGAAATAGATCTTCCCAGGACAAAATTGAATGCAGATGAGCAAATGTGCTGCAATTTCTGTAGGATACCCATTACTGATTATCACCGACACTGCCCAAATTGTTCATATGATTTGTGCCTTAATTGCTGTAGAGATCTTCGAGAAGCAAATATAAATCAAGATACGGTAACCCCATCAGGTGAAGCAAAAATTCCTGATCGGAATATATTAAATAAGTTTCCTGATTGGAGATCCAATGGTGATGGCAGTATTCCATGCCCTCCAAAGAAATATGGTGGCTGTGGTTATTCTTCATTGAATTTAAGCCGCATCTTCAAGATGAATTGGGTTGCAAAATTGGTGAAAAATGTGGAGGAGATGGTTAGTGGCTGCAGGGTTAGTGAAGATGAAGGTCCACCAGAAACCAGGTTAAATGATCCCAAATTTTGCCAACACTCTCTGAGAGAGGCCAGCAATGACAATTATCTATACTGTCCGGCATCTGAAGATCTCAAAACTGACGGGATTGTCAATTTTAGAAAGCACTGGAAAAATGGTGAGCCCATTATTGTTAAGCAAGTATTTGATAGGTCATCTAGCTGGGATCCAATGGTCATATGGAGAGGGGTTCGAGAGACAGCTGATGAGAAAATGAAAGAAGTTGAGAACAGAGTGGTTAAGGCCATAGATTGCTTAACCTGGTCAGAGATAGATATTGAACTTGATCAGTTCATGAAAGGATACTTTGAGGGGCGTACCCATGAAAATGGTTGGCCACAAATGTTCAAATTGAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTTTATTGCATCAAAGACCTGAAGTTATCAGCAAACTGCCTTTACTTGAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATTTATATCTCATATGGGATCAATGAGGAACTTGGTAGGGGTGACTCAGTGACCAATCTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTCCATACATGTGAAGTGAAGCTGAAGAAATTGCAGGGAACGAAAATTGAAAAGAAACAAAAAACATCTGAGGCAAATGAATCACCTGGGGATCCACAAATATATTCAGGGGGGAGTTCATCTGATTCATCACTTGGCACAGAAAGAAATGGACAGGATTTGGATTCCAACAAAAAAACATCAAATATCGAGCAAGGGTTTGAAATTTATTCTAGTGCTGATGGGGATATGGTCAATTCTGAAGTTCCAATCAGACAAGATGGAGATGCCACTGAGAAATCACATCCTGGAGTTCTCTGGGATGTCTTTCGTCGGCAGGATGTTCCAAAGCTGACAGAATTTTTGAAAATGCATTGGAAAGAGTTTGGGCAGCCAGACAATATAGTAAATAAATTTGTTACAAGGCCTCTATATGATGGGGTTATTTTTCTTGACATACGCCATAAAACAAAGCTGAAGGAAGAATTTGGAGTGGAGCCATGGTCATTTGAACAGAAGGTGGGGGAAGCTATATTTGTTCCTGCTGGGTGCCCTTTCCAAGCAAGGAATGTTCAGTCCACTGTTCAGCTGGGCCTTGATTTCTTATCACCAGAAAGCCTGGGAGAAGCTGTGAGGTTGGCAGAGGATGTCCGCTCTCTGCCAAATGAGCATGAAGCAAAGCTTCAAGTATTGGAGGTTGGGAAGATATCTCTTTATGCAGCAAGTTCAGCCATCAAAGAAGTTCAGAAACTCGTACTAGACCCGAAACTTGGTGCAGAGATTGGATTTGGAGATCCCAATCTGACTGCAATGGTTGCTGAGAACTACGAGAGGATGGTTAAGCGAAGGCAGATTACTTGTGCTTGA 2775 0.422 MDHARSTSGNVEDNVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRASLKKAKRKSIGESDIYLESKSEDFDMPLASMKVEQHSASAKNKASKYQFRYAAETPTRRTTSVRNAPKPNDDSPDDIPQYEENWTSYESPPASGMDSSRKRSQRSLDVNATTEYSDGSTNSSDDTGGHICHQCRRNDRDRVIWCLKCDRRGYCENCILTWYSNMSLDEIQRTCPACHGTCNCRVCVRADNSIKVRIREIPVLDKLQYLHLLLSSVLPVVKQIHREQCFEVELEKLRGIEIDLPRTKLNADEQMCCNFCRIPITDYHRHCPNCSYDLCLNCCRDLREANINQDTVTPSGEAKIPDRNILNKFPDWRSNGDGSIPCPPKKYGGCGYSSLNLSRIFKMNWVAKLVKNVEEMVSGCRVSEDEGPPETRLNDPKFCQHSLREASNDNYLYCPASEDLKTDGIVNFRKHWKNGEPIIVKQVFDRSSSWDPMVIWRGVRETADEKMKEVENRVVKAIDCLTWSEIDIELDQFMKGYFEGRTHENGWPQMFKLKDWPSPSASEEFLLHQRPEVISKLPLLEYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGINEELGRGDSVTNLHFNMRDMVYLLVHTCEVKLKKLQGTKIEKKQKTSEANESPGDPQIYSGGSSSDSSLGTERNGQDLDSNKKTSNIEQGFEIYSSADGDMVNSEVPIRQDGDATEKSHPGVLWDVFRRQDVPKLTEFLKMHWKEFGQPDNIVNKFVTRPLYDGVIFLDIRHKTKLKEEFGVEPWSFEQKVGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEDVRSLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGAEIGFGDPNLTAMVAENYERMVKRRQITCA 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0112 924 SMART cupin_9 570 854 IPR003347 -
Dere02g0112 924 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 19 888 IPR045109 GO:0032454|GO:0033169
Dere02g0112 924 ProSiteProfiles JmjC domain profile. 563 854 IPR003347 -
Dere02g0112 924 MobiDBLite consensus disorder prediction 141 187 - -
Dere02g0112 924 SUPERFAMILY Clavaminate synthase-like 473 863 - -
Dere02g0112 924 Pfam WRC 18 58 IPR014977 -
Dere02g0112 924 MobiDBLite consensus disorder prediction 116 130 - -
Dere02g0112 924 MobiDBLite consensus disorder prediction 659 703 - -
Dere02g0112 924 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 186 253 IPR018866 -
Dere02g0112 924 ProSiteProfiles WRC domain profile. 17 61 IPR014977 -
Dere02g0112 924 Gene3D Cupin 452 863 - -
Dere02g0112 924 Pfam JmjC domain, hydroxylase 739 833 IPR003347 -
Dere02g0112 924 MobiDBLite consensus disorder prediction 113 187 - -
Dere02g0112 924 MobiDBLite consensus disorder prediction 669 703 - -
Dere02g0112 924 ProSiteProfiles Zinc finger RING-type profile. 192 239 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0112 Dere-ChrDere02 1141649 1147526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0112 18 58 GRF Transcription Factor Family AT3G13960 46.341 2.89e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dere02g0112 JmjC 4.7e-06 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0112 02 1141649 1147526 Dere02g0112 02 1141649 1147526 ECH