Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0105 ATGACTTTTGCTTGCAAGAAAATGGGTTGTGCTTCTGAGGTTCTGCACTCCATCTTCATCATCATCCTCTTGATGCTCCTATCATTTCGAAGAACCCACATTTTGTCTGTGGATGCTCTGTTCAATGCAGCAGGAAACTTCCAAGTCCATGGCCTACCAGAGAATGGACAGGAAAATGATTACCAGATTAAGAAAATCTCAGGACAAGATGAGAATGATGAGAAGGAAGCCCTAATAGTGGAAAAGTTCAGAGCTTTGCTTGGACTCGGGAGTTTCCACCCCAGAAGGCCATCCAATGGCGATTCTCAGTTTCTCTCTCCATCACCTTCTCCTTCACCCAACATTGAAGCTGAGGCTCCAACTCCATCTCCATCTCCTCTTCCGTTACCACACGTGTATGCTCATCCCTTTCCTCCACGACATCGTTCCCATTGGAATCCACCAGCTCACAAGTTTCAACATGAGGATAGGGGCAGAGCTAAAGCAATACTAGTAGGCGTGCTTGTGTCTGTGGGAGTTGCTACAGTGATTTGCGCTCTTGGGCTTATCTTAGTTTTCAGGAAATACAGAAATCACACAAGGAATCCCAAAAGGACAATGCCACTATGTAGCAAGAACAGAGGAAATGAAGGTACTTACGAAAATTCATCAAGCCAGGTGGGTTTAAACTCTGCCCTAGATCTATGTTATCTTAATTCTTTAGGCGAGGATGTAGAGCAACATACCCGTAGCTTGAAGCAAACTTCCGAAACGGTAAATACAATCTCAAATCATAGCTCCTTCCCAAAATGTGACAATTATGAGAAGATAGAGTTAAATCAAGAAGTGATTAGCTCAGGATATGATAATGCCAGCAGTTCTTCCACAAAGGAGATTCTATCTATTCACGAGGATGCAGAATCAGTGAAACGTGAATCCGAATCTGATGATGGCGGTGATAAAATCATTACCACGGAATGCCATTCATCAGATAGTGAAAGTTTTCATTCCTTTATTGATTCCCACTCATCAAATGTCAGACTTTCCAATGCTTCAGCGGGTAGTCTAAGTGAGACATTGTCTTTGTCCCCTCGAGCTTCTCAGTCTAATTCTACCAACACGCCAATTCCATTAACAAAACAAGTTCCACATTCTCCCCAAAATTCAGTTTCAAAGATCGGATCTCCACAATCTCCATGTACTCCAAAGCAGGAAGAGCAAAAGATTGCAACTTCTTCACTATGTCCAGAAGCCTCCTCACCCTCACCACCCCCACCACCACCACCACCACGTCCACCTCCACCTCCACCTCCACCTCTACAAATGCCCTTGTTTTCTTTGCATTCTCTTACTTCATCTAAAATTCCCTCCAAATCTCCACGTTCTTCAACATTGCATAGTTTGTCATCTCCAAGAAACTCAGATTCACACTCAGCATTGAATCGAAGTCGAGAAAATGAGTCGCCTTCTTCTTCTCAACCTCACACTACAAGATCCCCTCCTAGCATTCCTCCACCACCATGTCCTCCTCCACCCTATAAAGGAAACAACAACAATGTGAAAACTCCCCCTCCTCCACCATCTCAGCTTCCTCAATTTACGCCACTTGGCAAAGATGGAGCCCCCCTCCCAAAACTTAAACCGCTTCACTGGGACAAAGTAAGAGCTGCCCCAGATCGCACAATGGTTTGGGATAAGCTGCGATCGAGCTCATTTGAGTTTGATGAGGAAATGATCGAGACACTTTTTGGCTACAATTTGCAAAATTCAATGAAAAACGACGAGACAAAGAGCAAAAGCCCTTCACCAAGCAAGCATGTACTCGAGCCAAAGAGGCTGCAGAACATTACGATTCTTTCAAAAGCTCTGAATGTGACGGCTGAGCAAGTATGTGAAACCCTAGTACAAGGCAAGGGCCTCTCATTACAACAATTGGAGGCACTGGTCAAGATGGTACCCACCAAGGACGAAGAGGATAAGCTTTCAGGTTATAAAGGAGACATAAATGAGTTGGGATCGGCGGAAAAGTTTGTAAGGGCCATGCTTAGCGTACCCTTTGCCTTTCCACGTGTTGAAGCCATGCTTTACAGAGAAACCTTTGAAGATGAGATTGTCCACCTCAGGAATTCTTTTTTAATGCTCGAGGAGGCGTGCAAGGAACTAAGATCAAGCAGGCTCTTCTTGAAATTGCTTGAGGCTGTACTCAAAACTGGAAACCGTATGAACGTGGGGACAATAAGGGGAGGTGCCAGAGCATTTAAGCTCGATGCGCTTCTCAAGCTTGCTGATGTTAAGGGAACTGATGGGAAAACTTCGTTGCTCCATTTTGTTGTTCAGGAGATTGTTCGATCGGAAGGAATTAGAGTCTCAGATAGCATTATGGGGAAAATCAGCCAGAAAAGTAAGAAGAGAACAGAAGAAGAGAAGGAAGATGATTACAGAAGAATGGGATTAGAACTTGTTTCTGGTCTGAGTACTGAGTTATACAACGTAAAGAAGACAGCAACAATTGACTTAGACGTTCTTGCCAGCTCCGTCTCAAACCTTAAAGATGGAATGGCTAAGCTGCAATATCTAGTACAGGAGTTACAAACGGATGAAAGAAGTGAGAACTTTGTGAATTATATGAAGGCTTTCCTAAACTATGGAGATAGAAATCTAAGAGACTTGCAAGGAGATGAAGATAGAGTGCTAGCTCGTGTGAAAGAAATCACAGAGTATTTTCATGGGGATGTGAGCAAAGAAGACGCAAACCCACTTCGGATATTTGTGATCGTAAGAGACTTTATGGGCATGTTGGATAACGTTTGCAAAGAGCTTAGAAGGTCCCAAGTTTCCCGCACTCCAAACCCTCTCGCTCCATTCAGGTTTATAAGCTTGTTATCAGGGAATGTCATGGGTGGCAAGGACATATCTTGCGATCAAGTCATTGCTGAAATGCTTGAAATGGGGTTTGAATATGCCAATATTGTGGAAGCTTTGAAAGCAGTGGGTCCATCTATTAATAGCGCTGTGGAGTTTATCCTCAGTAGTGCTAGTAGAGATAGCATTAGAGCATCTACTACTAGTTCTAATAATTCCAAATTTTATAAGAGCAGCGAGAAGAGTCTCAGTAAAAGAGACTTGGCCTCATCACATTCCGTAAGTCATGTTCGACAGTCTAGCATGCTGGACCATTTCGAATCCACTAACAAATCCACAGAAAGCAAGACAGATATTGAAGTTGGTGTACCATTTCACGAGTTGGAAGTTCTTCCAGGCGTTGTGGAAGAGCACAAAGAGCCTTTCTCTGACATGGATATTGATTCCAATATGCTGTCAGGATCCCACATAGTGGATTCCCTGGAAGAATTGGATAGCTCATCAGATTGGGAGCAGAAAGCTAGCAATCTCTTGCAAAAGCATTTTGGTTTTTCATCCTTAAAGAGTTTTCAAAAGGAAGCCCTCACTGCATGGGTAACTCATAAAGACTGTCTCGTCCTGGCTGCAACAGGATCTGGAAAATCTCTGTGCTTTCAGATTCCTGCATTGTTATCTGGGAAGGTGGTGGTTGTGATTTCACCCTTAATAAGCCTAATGCATGATCAATGCTTAAAGCTAGCAAGACATGGGATCAGCGCTTGCTTTCTTGGGTCTGGGCAACCTGACAATACTGTTGAACAGAAAGCAATGAGAGGCATGTATAATATAATATATATTTGCCCAGAGACATTTCTAAGATTGATTAAACAACTACAAAAGCTTGCTAAAAGCCATGGTATTGCTTTATTTGCAATAGATGAAGTACACTGTGTTTCTAAATGGGGCCATGATTTTCGGCCAGACTACAGACGACTGTCTGCATTGAGGGAAAATTTCAGTACTAGCAAGCTAGAATTCCTGAAATTTGATATACCTGTAATGGCTTTGACTGCTACAGCTACAAACCGGGTTCGAGAGGACATTTTAAAGTCACTACATATGTCAAACGAAACGAAGATTGTGCTTACTTCATTTTTCCGGCCTAATCTACGGTTTTTTGTAAAACATAGTAAGACGTTGTCGTCTTCTTATGGGAAAGATTTTCACGAGTTAACTGAACTATATGGTAGAAAGCCGAAGACAGATGAAAAGAAAAAAGTTTTCTTATCAGAGGAATCAGAAGAAGTTTACAATAGCTCTGATTCCAGTGGAATCTTTAAGACAGAAAGTCTTTCTTCTTATGATTTGGATGATGACCAAGATGATTACATTGAAGGAGATATTAGTATATTGCACTCAAGGAGCACAGATGATTCTATAAAGGGAAAAGAATTGTCAGTTGAGTACCTTGAAAATGATGCTGATGTCTTTCAAAGCGTGGATGACTGGGATGTTGCCTGTGATGGATTCTGTGGACAACCTCCTCAAACGGAATGGGAGTTGTTTGATGTCATTGATCCACCCAGGAAACCAGAAGAAAGACTTGGACTTCTTAAGGAGCCTTTAGAGCAAGGACCAACTATCATATATGTTCCCACGAGAAAAGAAACACTGAGCATTGCTAATTATCTATGCCAGTTTGGTGTGAAGGCTGCTGCTTATAATGCATCGCTGCCCAAATCACATCTAAGGAGGGTACACAAAGAGTTCCATGAAAACGCATTAGAGGTTGTTGTTGCAACAGTGGCTTTTGGAATGGGGATTGACAAATTGAATGTCAGAAGAGTCATCCACTATGGTTGGCCACAGAGCTTAGAAGCCTATTACCAGGAAGCTGGTCGGGCTGGACGTGATGGAAAATTAGCAGATTGCATTCTCTATGTAAACCTATCAAGAGTACCATCACTTTTGCCAAGTCGTAGAAGTGAAGATCAGTTAAAACAAGCGTATATCATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCATGTTGTAGAGCAAAGACTCTTGTGGAGTACTTCGGAGAGGATTTCAGTGATCAAGAGTGTCTTATATGTGATGTGTGCGCTGATGGACCGCCTCAAATGCAAAATCTGAAGGAGGAGGCATGTACTCTACTACAAGCTGTAACTGCACATTATGGACGAAGCTCTGATATGGATTACTTATATGATGATGATATACATTTTGACCCAGATGAAAGAAGACTTCAAGAGAGGCCAAGTCTTAAGATGGTTGTTAGGAAGATAAGGGAGCAGTCTCAAAAATTTTTGACCACTGATATGCTATGGTGGAGAGGTCTTGCTCGAGTAATGGAACTTAAAGGATACATCAGGGAGGGAGATGATAAGATCCATGTTCAGATAAAGTATCCGGAGCCAACAGAACTGGGATTGAAATTCGTGGAGTCCACTAGTGAGCAAGCTTTCCATGTTTACCCTGAAGCAGATATGCTGCTTTCGGTGGAAACTAGCAAACCATACTCCTCGATCTCGGACTGGGGAAAAGGCTGGGCAGATCCTGAGATTCGTCGCCAGCGGCTCAAAAGAATGCAACTCGATAGAAAGCCATGGATGCTGCGAAGTCCTAAAAAGTCACGGAAGAGAAAAGCTAGTAAAGTGAAGCCTGATCTGAGGACTTGTCGTGGGAGACTAGCTGCGAAACTCTCGAAAACATGA 5562 0.4266 MTFACKKMGCASEVLHSIFIIILLMLLSFRRTHILSVDALFNAAGNFQVHGLPENGQENDYQIKKISGQDENDEKEALIVEKFRALLGLGSFHPRRPSNGDSQFLSPSPSPSPNIEAEAPTPSPSPLPLPHVYAHPFPPRHRSHWNPPAHKFQHEDRGRAKAILVGVLVSVGVATVICALGLILVFRKYRNHTRNPKRTMPLCSKNRGNEGTYENSSSQVGLNSALDLCYLNSLGEDVEQHTRSLKQTSETVNTISNHSSFPKCDNYEKIELNQEVISSGYDNASSSSTKEILSIHEDAESVKRESESDDGGDKIITTECHSSDSESFHSFIDSHSSNVRLSNASAGSLSETLSLSPRASQSNSTNTPIPLTKQVPHSPQNSVSKIGSPQSPCTPKQEEQKIATSSLCPEASSPSPPPPPPPPRPPPPPPPPLQMPLFSLHSLTSSKIPSKSPRSSTLHSLSSPRNSDSHSALNRSRENESPSSSQPHTTRSPPSIPPPPCPPPPYKGNNNNVKTPPPPPSQLPQFTPLGKDGAPLPKLKPLHWDKVRAAPDRTMVWDKLRSSSFEFDEEMIETLFGYNLQNSMKNDETKSKSPSPSKHVLEPKRLQNITILSKALNVTAEQVCETLVQGKGLSLQQLEALVKMVPTKDEEDKLSGYKGDINELGSAEKFVRAMLSVPFAFPRVEAMLYRETFEDEIVHLRNSFLMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGARAFKLDALLKLADVKGTDGKTSLLHFVVQEIVRSEGIRVSDSIMGKISQKSKKRTEEEKEDDYRRMGLELVSGLSTELYNVKKTATIDLDVLASSVSNLKDGMAKLQYLVQELQTDERSENFVNYMKAFLNYGDRNLRDLQGDEDRVLARVKEITEYFHGDVSKEDANPLRIFVIVRDFMGMLDNVCKELRRSQVSRTPNPLAPFRFISLLSGNVMGGKDISCDQVIAEMLEMGFEYANIVEALKAVGPSINSAVEFILSSASRDSIRASTTSSNNSKFYKSSEKSLSKRDLASSHSVSHVRQSSMLDHFESTNKSTESKTDIEVGVPFHELEVLPGVVEEHKEPFSDMDIDSNMLSGSHIVDSLEELDSSSDWEQKASNLLQKHFGFSSLKSFQKEALTAWVTHKDCLVLAATGSGKSLCFQIPALLSGKVVVVISPLISLMHDQCLKLARHGISACFLGSGQPDNTVEQKAMRGMYNIIYICPETFLRLIKQLQKLAKSHGIALFAIDEVHCVSKWGHDFRPDYRRLSALRENFSTSKLEFLKFDIPVMALTATATNRVREDILKSLHMSNETKIVLTSFFRPNLRFFVKHSKTLSSSYGKDFHELTELYGRKPKTDEKKKVFLSEESEEVYNSSDSSGIFKTESLSSYDLDDDQDDYIEGDISILHSRSTDDSIKGKELSVEYLENDADVFQSVDDWDVACDGFCGQPPQTEWELFDVIDPPRKPEERLGLLKEPLEQGPTIIYVPTRKETLSIANYLCQFGVKAAAYNASLPKSHLRRVHKEFHENALEVVVATVAFGMGIDKLNVRRVIHYGWPQSLEAYYQEAGRAGRDGKLADCILYVNLSRVPSLLPSRRSEDQLKQAYIMLSDCFRYGMNTSCCRAKTLVEYFGEDFSDQECLICDVCADGPPQMQNLKEEACTLLQAVTAHYGRSSDMDYLYDDDIHFDPDERRLQERPSLKMVVRKIREQSQKFLTTDMLWWRGLARVMELKGYIREGDDKIHVQIKYPEPTELGLKFVESTSEQAFHVYPEADMLLSVETSKPYSSISDWGKGWADPEIRRQRLKRMQLDRKPWMLRSPKKSRKRKASKVKPDLRTCRGRLAAKLSKT 1853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0105 1853 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1142 1318 IPR014001 -
Dere02g0105 1853 MobiDBLite consensus disorder prediction 352 539 - -
Dere02g0105 1853 FunFam ATP-dependent DNA helicase 1105 1326 - -
Dere02g0105 1853 NCBIfam RecQ family ATP-dependent DNA helicase 1124 1339 IPR004589 GO:0004386|GO:0006310
Dere02g0105 1853 CDD UBA 970 999 - -
Dere02g0105 1853 MobiDBLite consensus disorder prediction 438 490 - -
Dere02g0105 1853 SMART ultradead3 1130 1333 IPR014001 -
Dere02g0105 1853 MobiDBLite consensus disorder prediction 352 410 - -
Dere02g0105 1853 CDD DEXHc_RecQ 1125 1325 - -
Dere02g0105 1853 MobiDBLite consensus disorder prediction 113 135 - -
Dere02g0105 1853 FunFam ATP-dependent DNA helicase 1463 1588 - -
Dere02g0105 1853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1173 1591 IPR027417 -
Dere02g0105 1853 MobiDBLite consensus disorder prediction 98 153 - -
Dere02g0105 1853 FunFam ATP-dependent DNA helicase 1590 1768 - -
Dere02g0105 1853 MobiDBLite consensus disorder prediction 491 525 - -
Dere02g0105 1853 Gene3D - 1462 1588 IPR027417 -
Dere02g0105 1853 MobiDBLite consensus disorder prediction 411 436 - -
Dere02g0105 1853 MobiDBLite consensus disorder prediction 197 217 - -
Dere02g0105 1853 Gene3D - 1096 1326 IPR027417 -
Dere02g0105 1853 ProSiteProfiles Formin homology-2 (FH2) domain profile. 529 952 IPR015425 -
Dere02g0105 1853 Pfam Helicase conserved C-terminal domain 1472 1578 IPR001650 -
Dere02g0105 1853 PANTHER FORMIN-RELATED 454 960 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Dere02g0105 1853 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1470 1617 IPR001650 -
Dere02g0105 1853 SMART it6_source 529 941 IPR015425 -
Dere02g0105 1853 SUPERFAMILY UBA-like 966 1004 IPR009060 GO:0005515
Dere02g0105 1853 Gene3D - 967 1029 - -
Dere02g0105 1853 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 963 1004 IPR015940 -
Dere02g0105 1853 MobiDBLite consensus disorder prediction 98 112 - -
Dere02g0105 1853 Pfam DEAD/DEAH box helicase 1137 1304 IPR011545 GO:0003676|GO:0005524
Dere02g0105 1853 SUPERFAMILY Formin homology 2 domain (FH2 domain) 542 937 - -
Dere02g0105 1853 MobiDBLite consensus disorder prediction 1035 1055 - -
Dere02g0105 1853 MobiDBLite consensus disorder prediction 281 330 - -
Dere02g0105 1853 Gene3D Formin, FH2 domain 553 942 IPR042201 -
Dere02g0105 1853 SMART uba_6 966 1003 IPR015940 -
Dere02g0105 1853 MobiDBLite consensus disorder prediction 293 320 - -
Dere02g0105 1853 Gene3D - 1593 1772 IPR036388 -
Dere02g0105 1853 Pfam Formin Homology 2 Domain 533 926 IPR015425 -
Dere02g0105 1853 MobiDBLite consensus disorder prediction 1034 1065 - -
Dere02g0105 1853 SMART helicmild6 1498 1579 IPR001650 -
Dere02g0105 1853 Pfam RecQ zinc-binding 1601 1651 IPR032284 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0105 Dere-ChrDere02 1066364 1077961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0105 514 949 FH2 protein (formin) Gene Family AT3G05470 73.864 0.0 661
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0105 02 1066364 1077961 Dere02g0105 02 1066364 1077961 CCT
Dere02g0105 02 1066364 1077961 Dere02g0105 02 1066364 1077961 ECH