Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0090 ATGAGGAAGGGTCCATACAGTACCAAGTTATCCATTACCAAGTATCAAATCCTAGAAAGCCCCGGTTCGCTTCTCGCAGAATTGGCTCAGGTTCGCGTCCTCTGTTCAGGAAAAATGAGTGGCCGTTCAAGTCGCACTATTTATGTTGGCAATCTTCCTGGTGATATTCGATTGAGAGAAGTAGAGGATCTTTTCTACAAGTATGGTCCCATTGTTGACATTGATTTAAAAATCCCTCCACGACCACCTGGTTATGCTTTTGTGGAGTTTGAGGATCCTCGTGATGCTGAAGATGCTATTCGCTATCGTGATGGTTATAATTTTGATGGTTTTCGAATGCGAGTTGAATTTGCACATGGTAGGAGGGGATATTCATCATCAGTAGACCGTCACAGTAGTTATAGTGGTGGTGGTAGTGGTAGCCATGGAGTTTCCAGACGTTCTGACTATCGTGTTATGGTCACTGGATTACCTCCTTCAGCTTCATGGCAAGACTTGAAGGATCATATGCGTAAAGCTGGTGATGTATGTTTCTCCCAAGTCTTCCGTGAGCGTGGTGGCATGACTGGGATAGTGGATTATACTGATTACGATGATATGAAATATGCTATCAGGAAACTTGATGACTCAGAATTCCGGAATGCATTTTCTCGGGCATACATACGGGTGAGGGAATATGATCGACGGAGTTATTCTAGAAGTCCCAGTCGTGATTCAAGGAGGAGCTATTCTAGAAGTTATAGCCGCAGTCCTTATATGTCACGAAATCGTAGCCGTAGTTGGAGTCGGAGTCGAAGTCGGAGTAGGAGCTATAGTGGCAGGAGCAGAAGTTTGTCTCCAAAGGTGAAATGCTCGCGATCTTCAATATCTCTTTCAAGATGTGGCTTTTCTCGGTGA 897 0.4448 MRKGPYSTKLSITKYQILESPGSLLAELAQVRVLCSGKMSGRSSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDAEDAIRYRDGYNFDGFRMRVEFAHGRRGYSSSVDRHSSYSGGGSGSHGVSRRSDYRVMVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTDYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRRSYSRSPSRDSRRSYSRSYSRSPYMSRNRSRSWSRSRSRSRSYSGRSRSLSPKVKCSRSSISLSRCGFSR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0090 298 MobiDBLite consensus disorder prediction 227 244 - -
Dere02g0090 298 FunFam serine/arginine-rich splicing factor SR34A-like 150 227 - -
Dere02g0090 298 Gene3D - 36 149 IPR012677 -
Dere02g0090 298 SUPERFAMILY RNA-binding domain, RBD 43 218 IPR035979 GO:0003676
Dere02g0090 298 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 39 149 - -
Dere02g0090 298 MobiDBLite consensus disorder prediction 127 142 - -
Dere02g0090 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 150 228 IPR000504 GO:0003723
Dere02g0090 298 CDD RRM1_SF2_plant_like 46 116 - -
Dere02g0090 298 MobiDBLite consensus disorder prediction 227 282 - -
Dere02g0090 298 Gene3D - 150 227 IPR012677 -
Dere02g0090 298 SMART rrm1_1 46 116 IPR000504 GO:0003723
Dere02g0090 298 SMART rrm1_1 151 220 IPR000504 GO:0003723
Dere02g0090 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 120 IPR000504 GO:0003723
Dere02g0090 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 113 IPR000504 GO:0003723
Dere02g0090 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 152 214 IPR000504 GO:0003723
Dere02g0090 298 MobiDBLite consensus disorder prediction 245 282 - -
Dere02g0090 298 MobiDBLite consensus disorder prediction 125 145 - -
Dere02g0090 298 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 37 272 - -
Dere02g0090 298 CDD RRM2_SF2_plant_like 150 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0090 Dere-ChrDere02 914213 919839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0090 46 121 Eukaryotic Initiation Factors Gene Family AT3G11400 31.646 9.94e-06 44.7