Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0084 ATGTCCGGGGATGGACAGAACAGGAGGAGAATGGCCATCATTGGCGTCTCCACGTTCTTACTGGTGGGTATGGTGGTGGCCGTCACGGTTGGCGTGACGTGGAAGCAGAAAGAGTCGACGGAGGATAACCAGGATGCCGGCAAGTCCGTCTCAAACAAAGTAAAAGCCGTCCAAAGCCTTTGCGCTCCCACCGACTACAAAAAAGAATGCGAGGAGACCCTCGAAGCCGAGTCCGGCAACACCACCGACCCCAAAGAACTCATCATGAAGGCCTTCAACATCACCGTCAAGAAAATCGAGTCGGGTCTCGAGAAATCCCACACCTTGCACGAGGCGGAGAAGGATCCCCGAGCCAAGCTCGCCCTCCAAACCTGCAGGCACCTCATGCACCTTTCCGTTGGGGAGTTCCAGAAGTCACTGGGAACCATCGAGACCTTCGATTTCAGCAACCTGGACAGGATTCTCATGAACCTCAAGGTTTGGCTGAGCGGAGCCATCACGTACCAAGAAACGTGCCTAGAAGGCTTCCAGAACTCCACAAGCGATGCTGGTCAGAAGATGAAGGAGATCTTGCAATCCGCGATGCACATGAGCAGCAACGGCCTCGCCATCGTCAACGACATGGCCGAAGCTTTAACCAGTTTGAATTTCGCAAAACAAGGAAGGCGTCTGCTTCAAGACCAAGATGAGGAGGCCGAGGCCCCTGGGGAAGAAGCCGTTATGGGACACGGTTTCCAGCTTCCCGAATGGGTGGAAGAAAGTGCTGGTACTCGAAGACTGCTCGAGGCTGACAAAGGCAAACTCAAGCCTGATATTGTGGTTGCCAAAGATGGGAGTGGGAAATACAAGACCATCGCCCACGCACTAAAGCGTGTGCCCAAAAAGAACAAGAAGCCATTCGTGATCTACATAAAGGAAGGGGTGTACAAAGAGTATCTTCACATTACCAAGGACATGACCTACGTGGTCTTAGTGGGGGATGGTGGGAACAAGACACGCATCACAGGCAACAGAAACTTCGCGGCTGGCATCAACACCTATAACACCTGCACGGTGTCCGTAGAAGGAGACCATTTCGTGGCCATCAATATGGGGTTCGAGAACACGGCTGGTCCCGACGGCCATCAAGCCGTGGCTTTGAGGGTGCAATCCGACTTCTCCATCTTCTACAAATGCCAAATGGATGGGTATCAGGACACACTGTACGCCCACGCCATGCGTCAATTCTACAGGGACTGCGTCATCTCTGGGACCATAGACTTCATCTTCGGGGATGCTGCCGCCGTGTTGCAGAACTGCACCTTTGTGGTGAGAAAGCCAAACGAGAACCAGCAATGCATAGTGACGGCGCAAGGGAGGAAGGAGAGGCATCAGCCCTCGGCTTTGGTGATCCAAGGTGGGTCCATAGTGGCCGACCCAGAGTACTATCCAGTGAGGTTCAAGAACAAGGCGTACCTGGGGCGTCCCTGGAAGAACTACTCCAGGACCATCATCATGGAAACCTTCATCGACGACCTGATCGACCCCGAAGGGTTTCTAAAGTGGGACGGCAACTCCACATCCTACCAGACATGCTTCTACGCCGAGTACGACAACAAGGGCCCAGGTGCCGACATGTCCAAGCGCGTCCAGTGGAGGGGGATCAAGAAGATCACCCCTCAACATGCTGCCGATTTCTCGCCCTTGAGGTACTTCAAGACAGATTACTGGATTAGGGAAACCAAAATTCCTTACAATCCTGGCATGATCGCCGCTGCATGA 1761 0.5361 MSGDGQNRRRMAIIGVSTFLLVGMVVAVTVGVTWKQKESTEDNQDAGKSVSNKVKAVQSLCAPTDYKKECEETLEAESGNTTDPKELIMKAFNITVKKIESGLEKSHTLHEAEKDPRAKLALQTCRHLMHLSVGEFQKSLGTIETFDFSNLDRILMNLKVWLSGAITYQETCLEGFQNSTSDAGQKMKEILQSAMHMSSNGLAIVNDMAEALTSLNFAKQGRRLLQDQDEEAEAPGEEAVMGHGFQLPEWVEESAGTRRLLEADKGKLKPDIVVAKDGSGKYKTIAHALKRVPKKNKKPFVIYIKEGVYKEYLHITKDMTYVVLVGDGGNKTRITGNRNFAAGINTYNTCTVSVEGDHFVAINMGFENTAGPDGHQAVALRVQSDFSIFYKCQMDGYQDTLYAHAMRQFYRDCVISGTIDFIFGDAAAVLQNCTFVVRKPNENQQCIVTAQGRKERHQPSALVIQGGSIVADPEYYPVRFKNKAYLGRPWKNYSRTIIMETFIDDLIDPEGFLKWDGNSTSYQTCFYAEYDNKGPGADMSKRVQWRGIKKITPQHAADFSPLRYFKTDYWIRETKIPYNPGMIAAA 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0084 586 FunFam Pectinesterase 53 209 - -
Dere02g0084 586 Gene3D - 265 582 IPR012334 -
Dere02g0084 586 SUPERFAMILY Pectin lyase-like 269 580 IPR011050 -
Dere02g0084 586 CDD PMEI-like_3 59 209 - -
Dere02g0084 586 ProSitePatterns Pectinesterase signature 2. 415 424 IPR033131 -
Dere02g0084 586 ProSitePatterns Pectinesterase signature 1. 296 315 IPR018040 -
Dere02g0084 586 PANTHER PECTINESTERASE 20 572 - -
Dere02g0084 586 FunFam Pectinesterase 265 582 - -
Dere02g0084 586 Pfam Plant invertase/pectin methylesterase inhibitor 56 204 IPR006501 GO:0004857
Dere02g0084 586 Pfam Pectinesterase 271 566 IPR000070 GO:0030599|GO:0042545
Dere02g0084 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 208 IPR035513 -
Dere02g0084 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 209 IPR035513 -
Dere02g0084 586 SMART PMEI_2 52 204 IPR006501 GO:0004857
Dere02g0084 586 NCBIfam pectinesterase inhibitor domain 48 207 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0084 Dere-ChrDere02 874364 876124 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0084 4 584 Carbohydrate Esterase AT3G05610 47.952 0.0 578