Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0083 ATGGCCATCTCCAAGTTCTCCATAAGCTTATCATGCATCCTCTTTCTTTTCTTCTTTTTCTCCAACTCTGCTTCGTCTCTTGGAACCTCTTCTTCCTCCATAGATACAATTTGTGACCCTACACCTTACCCCTCCTTTTGCAAGTCTAGTTTACCTTCCAATGACCTGGGTGATTTACATGGGTATGCACGATTTTTCATAAATATCTCATTATCATCATCGACCAGTTTTGTTTCATCAGTCCTCAAACACCTTCAATCTACGTCTGAACTTCCGGAGTCCACCGTGCGTGCCCTTCAAGATTGCTACCTCTTATCTGACCTGAACCTAGATTTCTGGTCCAAGACTCTGCAACGCATAAAATCCACCAACAGCCCAAGCAGCTCCCAGGAAGCTGAAGACTTGCAAACCTTAATTAGCGCTACTCTAACAAATTACGAGACCTGCTCAGACAGCCTTCAACAAGCAACATCCAGCACTGACACTAACGATGACCTACTAAGCCTTATTTCCAACGGGACCAAGTTTTATAGCATATCTCTTTCGCTGTATAATCGTGGATGGGCTATGAACACAAGCACAATAAGGAAGCTAAGTGAAAGAAAGCAATACCCGTGGGAACAAAGGGTGTACGAACTTATACGTGGAAGTGGACGGAAGCTTCTGCAATCCCCTCCTGACAATGTTTCAGTGAGCCAAAAGGTGGTAGTGAATCCAGATGGTTCTGGAAACTTCACCACCATCAACGATGCCGTAAATGCAGCTCCAAATAACACAGCGGCCGGCAATGGCTTCTTCGTGATTTACGTGGCGGCGGGAGAGTACCAAGAGTACGTGTCTATCCCCAAATATAAAACATACTTGATGATGATAGGAGATGGCATGAACCAAACTATCATCACAGGTAATCACAGCGTCGCCGATGGCTGGACTACCTTCAATTCTGCCACATTTGGTAATTATTTCATTAATTGA 975 0.4441 MAISKFSISLSCILFLFFFFSNSASSLGTSSSSIDTICDPTPYPSFCKSSLPSNDLGDLHGYARFFINISLSSSTSFVSSVLKHLQSTSELPESTVRALQDCYLLSDLNLDFWSKTLQRIKSTNSPSSSQEAEDLQTLISATLTNYETCSDSLQQATSSTDTNDDLLSLISNGTKFYSISLSLYNRGWAMNTSTIRKLSERKQYPWEQRVYELIRGSGRKLLQSPPDNVSVSQKVVVNPDGSGNFTTINDAVNAAPNNTAAGNGFFVIYVAAGEYQEYVSIPKYKTYLMMIGDGMNQTIITGNHSVADGWTTFNSATFGNYFIN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0083 324 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 186 IPR035513 -
Dere02g0083 324 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 186 IPR035513 -
Dere02g0083 324 CDD PMEI-like_3 36 189 - -
Dere02g0083 324 Gene3D - 228 322 IPR012334 -
Dere02g0083 324 Pfam Plant invertase/pectin methylesterase inhibitor 33 182 IPR006501 GO:0004857
Dere02g0083 324 Pfam Pectinesterase 235 319 IPR000070 GO:0030599|GO:0042545
Dere02g0083 324 NCBIfam pectinesterase inhibitor domain 6 172 IPR006501 GO:0004857
Dere02g0083 324 SMART PMEI_2 29 183 IPR006501 GO:0004857
Dere02g0083 324 PANTHER PECTINESTERASE 12 319 - -
Dere02g0083 324 SUPERFAMILY Pectin lyase-like 234 319 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0083 Dere-ChrDere02 871569 872543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0083 8 319 Carbohydrate Esterase AT4G02330 40.625 1.10e-65 214