Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0082 ATGGCCTTGGCTCATTTCCTTTTCATTCTCATCCTTTTACCTTCCTTGGATATTGAAGCCTTCTTGCATGAAATTCCCTCAGATACCAGAAACCAATTAGACTTGCACGCCTTGATTGCACAAGTCTGCATGGACGTTGAAAACCAAGACACATGCCTAACCAATATCCAAAACGAGATTGTCAAAAATGGCCCTCCAAGCCCAGCTTCTGTTGTGACTGCGGCACTGAGAGCCACACTCAACGAAGCCATGGGTGCGATGGACAAAATTACAAAGTTTAGCACTTTCTCCATTAGCTACCGCGAGCAAGTAGCCATAGAAGACTGCAAAGAACTCCTCGATTTCTCAGTGTCCGAGCTGGCCTGGTCGCTGGGTGAGATGAGGAGAGTTCGAGCAGGTGATAAAAACGTGGAATATGAAGGAAACCTCGAAGCTTGGCTAAGTGCAGCACTGAGCAACCAAGATACGTGTCTCGAGGGCTTCGAGGGCACAGACAGGCGTCTTCAGGGTTACATCAGCGGAAGCTTGACACAAGTCACACAGCTTATAAGTAACGTTTTGGCTTTGTATACTCAATTGCATAGCTTACCCTTCAAACATCCAAGAAACAGAACTATGGTAAGAAATGATGAGAGCTTGGAGTTTCCGGAATGGATGACGGAGGGCGATCAAGAACTGCTTAAATCTCGGCCACGAGGAGTCCATGCAGACGCGGTTGTGGCGTTGGATGGGAGCGGCCATTACCGTTCGATCACAGAAGCTGTGAATGCAGCTCCAAGCCAGAGCAACAGGAGGTACGTCATTTACGTAAAAAAGGGGATTTACAAGGAGAATGTAGATATGAAGAGGAAGAAGACCAACATCATGTTCGTCGGAGATGGTATTGGCCGGACAATCGTCACAGGCAACCGCAACTTCATGCAAGGGTGGACAACTTTTCGAACCGCCACTGTTGCTGTGTCGGGTAAGGGATTCGTAGCAAGGGACATGACATTCCGAAACACAGCAGGACCAGAAAACCACCAAGCAGTGGCACTGCGGGTGGATTCAGACCAATCAGCCTTCTACAGGTGTAGCATAGAAGGCCACCAGGACACCCTATACGCCCACTCACTCCGACAATTCTACAGGGAATGCGAAATCTATGGCACCATAGACTTCATATTTGGGAACGGCGCGGCGGTGCTGCAAAACTGCAAGTTATTCACGAGAGTGCCACTTCCATTGCAGAAGGTTACCATCACAGCCCAAGGCAGAAAAAGTCCACACCAGAGCACTGGGTTCGTCATCCAGTATAGCTTTGTTCTGGCCACCCAACCCACCTATCTGGGGAGGCCATGGAAGCAGTACTCTCGAACGGTGTACATGAACACGTACATGAGTGGGCTTGTGCAGCCCAGAGGGTGGCTCGAGTGGTTTGGGAACTTTGCCTTGAACACCTTGTGGTACGGTGAGTATAGAAACTATGGGCCTGGTGCGTTGCTTGCGGGAAGGGTCAAATGGCCTGGTTATCACATTATTAAAGATGCTGGTACAGCTGATTTCTTCACGGTTCAGCGTTTCATTGATGGCGATAAGTGGTTGCCAGCTACAGGTATCAGGTTCACGTCTGGTTTGACCAATTGA 1626 0.492 MALAHFLFILILLPSLDIEAFLHEIPSDTRNQLDLHALIAQVCMDVENQDTCLTNIQNEIVKNGPPSPASVVTAALRATLNEAMGAMDKITKFSTFSISYREQVAIEDCKELLDFSVSELAWSLGEMRRVRAGDKNVEYEGNLEAWLSAALSNQDTCLEGFEGTDRRLQGYISGSLTQVTQLISNVLALYTQLHSLPFKHPRNRTMVRNDESLEFPEWMTEGDQELLKSRPRGVHADAVVALDGSGHYRSITEAVNAAPSQSNRRYVIYVKKGIYKENVDMKRKKTNIMFVGDGIGRTIVTGNRNFMQGWTTFRTATVAVSGKGFVARDMTFRNTAGPENHQAVALRVDSDQSAFYRCSIEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKLFTRVPLPLQKVTITAQGRKSPHQSTGFVIQYSFVLATQPTYLGRPWKQYSRTVYMNTYMSGLVQPRGWLEWFGNFALNTLWYGEYRNYGPGALLAGRVKWPGYHIIKDAGTADFFTVQRFIDGDKWLPATGIRFTSGLTN 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0082 541 Gene3D - 232 539 IPR012334 -
Dere02g0082 541 FunFam Pectinesterase 36 195 - -
Dere02g0082 541 SUPERFAMILY Pectin lyase-like 234 538 IPR011050 -
Dere02g0082 541 FunFam Pectinesterase 231 539 - -
Dere02g0082 541 ProSitePatterns Pectinesterase signature 2. 381 390 IPR033131 -
Dere02g0082 541 Pfam Plant invertase/pectin methylesterase inhibitor 38 189 IPR006501 GO:0004857
Dere02g0082 541 NCBIfam pectinesterase inhibitor domain 36 194 IPR006501 GO:0004857
Dere02g0082 541 ProSitePatterns Pectinesterase signature 1. 262 281 IPR018040 -
Dere02g0082 541 Pfam Pectinesterase 237 525 IPR000070 GO:0030599|GO:0042545
Dere02g0082 541 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 194 IPR035513 -
Dere02g0082 541 PANTHER PECTINESTERASE 21 529 - -
Dere02g0082 541 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 194 IPR035513 -
Dere02g0082 541 CDD PMEI-like_4 51 193 - -
Dere02g0082 541 SMART PMEI_2 34 189 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0082 Dere-ChrDere02 868486 870184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0082 8 541 Carbohydrate Esterase AT3G05620 63.119 0.0 710