Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0074 ATGACACTGCGTAGTATTTTTCGTCACCTTAAGCATGTGAAGCCCGTATACTGCGAGGGGAAAGTGGGAGCTCAAATTCTAGGCCCACTGATCACAAGTCCAATAGGCTTAACCATGCCCTCACCACAAGAATCTCGGCCCAATTTATCTTCCAAGGCAACCGACCGTCTGCTGAAAGAATCATTTTCCTGGATTCGGAAAAGAAATTCATCGTTTGTGGTATCTTCCTCCTCTCGCCGGTACAGTATCCTCCCGTCCTTTCTTCAGCTCCAATTCAAAGGAATGATCTCTGGTATTTTTTTTTTCCATGACACGATTGATCGATCCATGATGGTAAGGGGAGGAAAGGCTAGAAACAAACGCAGTTTCAGGAAAAGGGTTCGGTCAAAGGAAAGGTGTTCGGATGATTCAGATGAGGATTATATGGTTTCAGATGAAGGCAGAGATGTATCTGATTGTTCAGAGGATTGTTGCTCGTCTTTGAATGAATGTGATTCAGAGGAGAGTTTTGATAGTTTTATAGAGGAGGAGCAGGAGGAAATTGAAGAACTGAAGACTTTCAATAGATCGAAGCCAAAAAATGGCCTCTGTGGACAGCAGAAAAATAGAAGTAAACCTTCACAAAAGAGAGGTAGGACTACCTACGCAGAACAACTGAAAGAAGAGGGAGATGGAGATGGGAATGATGACGAGGACGAGGATGAGGATTTCAATTATGAGGATGATGAAGAATTTACACCAGAGGAAGAAGAACTGAGAGGGAAAAAGAAGAAAAATAATAGCATGAAAATGGGTAGAAAGGTACTGCAGAAAAGGGTTTCTGTGACTACTACAAGAAGTCGGAAAAGGAGGAGGAACTCCAGGGCTGCCAGGAAGCCCTTGAGAAAGAAAGGAAGAAAAAACGGGTGGTTGAGGAGAAAAGTAAGTTGTGATGATGATGGCGATTTTATTTACAATCGCCCAGCCATCAAGACAACGAGGAAGAAAAAACCGGGCAGAAAAAGGAGAAGACCTACATCTGATTATGAGGATACCATCTCCGAAGAAGAGAGAGAACAGGTGAGAGAAGCTGAGAAATTGTGTAGAAGTTTGATGACTAACTTGAGGGATTCATTACTTGTGACAAAAAATGAAGAGGTTGGATTCTACAGCGACCTACATCAGCAAATGAAGCCTCGAGGACAGAAGGGTATGGAAAAGATAGAGGAACCTGAAGGAAGAAAAGGCAAGGAAAAGGTAGAGGTTTTAGAAAGTGATGTGGGAAAGCAGGTGTGCGGAATTTGCCTTTCTGAGGAAGATAAAAGAAGAATAAGGGGAGTATTAAATTGTTGCACTCACTTTTTTTGTTTTGCTTGCATCATGGAGTGGGCAAAAGTGGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTCAAAACTATCAGTAAACGTGCACGATCAACAACATATTTGAGAGAGGTAGTGGTGCAAGTTCCTCAACGTGATCAGGTTTATCAGCCCTCCGAAGAAGAACTCAGGAGCTATATTGATCCATATGAGTACGTCATTTGTTCAGAGTGCCATCAAGGTGGAGATGACGGCCTGATGTTACTGTGTGATCTCTGTGATTCACCTGCCCACACATACTGTGTTGGTCTGGGGCGGGAAGTACCTGAAGGTAATTGGTATTGTGATGGTTGTAGACCAGTTGCTTTGGGATCTTCAAGTTCCCAAGTTCAAGAACGTGTTATTGATTCAAGGGTGACATTCCAAAGTCTCTCTGGTAGACCATCACCTGTTTCACGCGTACGAGAAAGTATGGGCCTTAATTTGATGTCTTCACCTTTTAGTCAAGGACTTGGGAACCTTTCATCTAGATTTTCTGGCAGAAGCGTTGATGGAGATTCTCCAGTATCAGGAGGTGGAGCACCAACTTTATCAGAGAGACGCCGGATACACTATCAAGTTCAACAACTACTTTCAAACCATAGAATGGATTCTACAACAGGCCGAACAAATGGTACTTCAGCTTCCGATTCAACTGGTAACTCAAATAGCTTTCAAATCGATCCAAGTAGGGAAACAGCCACTCAACGTACATGGACGCAGGATGTGGGAACATCATATCACACATCTTTTGAGGAAAGACAAGGCAACAATACTCCTCCACAAATGCAGGGCGGGGATCCTTTATCGATGAGAATAAGCAATTCGAGGAGGCCAGCGATCCAAGATTCAACTACAATTACCAATAGACCAGTGAATGTGAGTGGGGCATTTTGGCCGGGACTTTTGGCGACACCCCCAGTATCAGACTATGAACAAGTTCATCAGTTCAATAGCAAATCAAACACTGTTACCGATGACATCATTTTCCCTGCTGTCAGAGAAGAGAGTAAGTTCAAGAGTGCAAAGGAACAGTTGCAGTCAATGGTTAAAATCCACCTGAAAAGCTTGTCCAAAGATATTGATATAGGTCGCGGTACTTTCAAGGACATTGCAAGGAGTTCTACACACACCATACTAGCTGCTTGTGGTCTTGAGCACAGAAAAAGCGAGGTTTGCACCGTACCTCCACCATCCGTCTGTCCCCACATTGAACTAATATCCGGTGGTCGAACGAGCCTGATTGATGGATGCTGCTCATCTTGCTTTGATTCTTTTGTAGGAGATGTTGTGAAGAGGATCATAGATACAAGAATGTCACAATGGTTACGCTTAGGTCTTTAG 2706 0.4346 MTLRSIFRHLKHVKPVYCEGKVGAQILGPLITSPIGLTMPSPQESRPNLSSKATDRLLKESFSWIRKRNSSFVVSSSSRRYSILPSFLQLQFKGMISGIFFFHDTIDRSMMVRGGKARNKRSFRKRVRSKERCSDDSDEDYMVSDEGRDVSDCSEDCCSSLNECDSEESFDSFIEEEQEEIEELKTFNRSKPKNGLCGQQKNRSKPSQKRGRTTYAEQLKEEGDGDGNDDEDEDEDFNYEDDEEFTPEEEELRGKKKKNNSMKMGRKVLQKRVSVTTTRSRKRRRNSRAARKPLRKKGRKNGWLRRKVSCDDDGDFIYNRPAIKTTRKKKPGRKRRRPTSDYEDTISEEEREQVREAEKLCRSLMTNLRDSLLVTKNEEVGFYSDLHQQMKPRGQKGMEKIEEPEGRKGKEKVEVLESDVGKQVCGICLSEEDKRRIRGVLNCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKRARSTTYLREVVVQVPQRDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDLCDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQERVIDSRVTFQSLSGRPSPVSRVRESMGLNLMSSPFSQGLGNLSSRFSGRSVDGDSPVSGGGAPTLSERRRIHYQVQQLLSNHRMDSTTGRTNGTSASDSTGNSNSFQIDPSRETATQRTWTQDVGTSYHTSFEERQGNNTPPQMQGGDPLSMRISNSRRPAIQDSTTITNRPVNVSGAFWPGLLATPPVSDYEQVHQFNSKSNTVTDDIIFPAVREESKFKSAKEQLQSMVKIHLKSLSKDIDIGRGTFKDIARSSTHTILAACGLEHRKSEVCTVPPPSVCPHIELISGGRTSLIDGCCSSCFDSFVGDVVKRIIDTRMSQWLRLGL 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0074 901 MobiDBLite consensus disorder prediction 134 153 - -
Dere02g0074 901 CDD RING-HC_Topors 423 470 - -
Dere02g0074 901 SMART PHD_3 515 560 IPR001965 -
Dere02g0074 901 MobiDBLite consensus disorder prediction 617 641 - -
Dere02g0074 901 MobiDBLite consensus disorder prediction 654 696 - -
Dere02g0074 901 Coils Coil 347 367 - -
Dere02g0074 901 MobiDBLite consensus disorder prediction 391 410 - -
Dere02g0074 901 MobiDBLite consensus disorder prediction 187 349 - -
Dere02g0074 901 Pfam Ring finger domain 424 467 IPR001841 -
Dere02g0074 901 MobiDBLite consensus disorder prediction 304 318 - -
Dere02g0074 901 SUPERFAMILY FYVE/PHD zinc finger 486 561 IPR011011 -
Dere02g0074 901 MobiDBLite consensus disorder prediction 223 248 - -
Dere02g0074 901 ProSitePatterns Zinc finger RING-type signature. 444 453 IPR017907 -
Dere02g0074 901 MobiDBLite consensus disorder prediction 392 410 - -
Dere02g0074 901 ProSiteProfiles Zinc finger PHD-type profile. 513 562 IPR019787 -
Dere02g0074 901 MobiDBLite consensus disorder prediction 192 213 - -
Dere02g0074 901 SUPERFAMILY RING/U-box 424 473 - -
Dere02g0074 901 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 503 IPR013083 -
Dere02g0074 901 Pfam PHD-finger 515 561 IPR019787 -
Dere02g0074 901 PANTHER F18C1.6 PROTEIN 111 891 - -
Dere02g0074 901 ProSiteProfiles Zinc finger RING-type profile. 425 467 IPR001841 -
Dere02g0074 901 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 504 585 IPR013083 -
Dere02g0074 901 SMART ring_2 425 466 IPR001841 -
Dere02g0074 901 MobiDBLite consensus disorder prediction 276 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0074 Dere-ChrDere02 785377 789593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0074 433 559 C2H2 Transcription Factor Family AT3G01460 29.932 9.51e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere02g0074 PHD 3.2e-09 CL0390