Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0072 ATGGCTACGAGGAATCGCACCTTGCTCTACAGGAAGTATAGAGATGCATTGAAGAGTGTACGGGTTCCGTCGAGCTCGTTCACGAGTTCCGGTGGTGCCGGTGGCCCAGTGATCGAATTGGTCAGTACGTCTCTTCTGAATCAGAATCGTTCTTACGCTGCGCTTAGTACTGATGATCCTGGTAATTCAAGCAAGGGTCCACTTACTGTGGGGTTACCTCCAGCTTGGGTGGATGTTTCTGAAGAAATATCAGCAAATGTGCAACGTGCTCGCACAAAAATGGCAGAGTTGGCCAAGGCTCATGCAAAGGCTTTAATGCCATCATTTGGAGATGGTAAGGAGGAACAACGAGCTATTGAAACTCTAACTCATGAGATAACTGACTTAATAAAAAGATCAGAGAGGAGACTACAGCGACTTTCTGCTACTGGGCCTTCTGAGGATTCCAACGTGAGGAAAAACGTGCAGCGTTCTCTAGCTAATGACCTTCAGAGCCTCTCTGTAGAGCTCCGCAAGAAACAATCATCTTATTTGAAGCGACTGAGACAGCAAAAAGAGGGTCAAGATGGGGTGGATCTAGAGATGAACATAAATGGAAGTAAATCCAGATTTGAAGATGAAGATTTGGACAATATGGTATTTAATGAGCATCAGATGGCCAAGCTGAAAAAAAGTGAAGCATTCACAGTAGAAAGAGAAAAAGAGATCCAGCAGGTTGTGGAATCAGTAAACGAGCTTGCTCAAATTATGAAGGATTTATCTGTACTAGTAATAGACCAGGGAACCATTGTTGATAGAATAGACTACAACATTCAGAATGTTGCAACCACGGTTGAGGATGGCCTTAAACAGCTGCAAAAGGCGGAGAGAACGCAAAAAAAAGGGGGCATGGTGATGTGTGCGACGGTGCTTGTTATCATGTGCTTCATTATGTTGATTCTCTTAGTCCTTAAGGAAATATTTTTGTGA 969 0.4376 MATRNRTLLYRKYRDALKSVRVPSSSFTSSGGAGGPVIELVSTSLLNQNRSYAALSTDDPGNSSKGPLTVGLPPAWVDVSEEISANVQRARTKMAELAKAHAKALMPSFGDGKEEQRAIETLTHEITDLIKRSERRLQRLSATGPSEDSNVRKNVQRSLANDLQSLSVELRKKQSSYLKRLRQQKEGQDGVDLEMNINGSKSRFEDEDLDNMVFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATVLVIMCFIMLILLVLKEIFL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0072 322 SMART tSNARE_6 221 288 IPR000727 -
Dere02g0072 322 PANTHER SYNTAXIN 79 307 IPR045242 -
Dere02g0072 322 Pfam SNARE domain 262 314 IPR000727 -
Dere02g0072 322 Coils Coil 80 100 - -
Dere02g0072 322 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 226 288 IPR000727 -
Dere02g0072 322 SMART SynN_4 67 182 IPR006011 GO:0016020
Dere02g0072 322 FunFam Syntaxin-43 73 280 - -
Dere02g0072 322 SUPERFAMILY t-snare proteins 72 281 IPR010989 GO:0016020|GO:0016192
Dere02g0072 322 CDD SNARE_syntaxin16 231 287 - -
Dere02g0072 322 ProSitePatterns Syntaxin / epimorphin family signature. 232 271 IPR006012 GO:0005484|GO:0006886|GO:0016020
Dere02g0072 322 Gene3D - 73 280 - -
Dere02g0072 322 Coils Coil 322 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0072 Dere-ChrDere02 771405 774895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0072 1 322 SNARE and Associated Proteins AT5G26980 77.231 0.0 508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0072 02 771405 774895 Dere02g0072 02 771405 774895 ECH
Dere01g3456 01 49087752 49091323 Dere02g0072 02 771405 774895 ECH