Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0065 ATGGATGAGCTGCGGCCTTACTCCGACGGAGCCGAGCTGGATGCGATCTTTGACGACGACGTGTGGAGGCGCACGACGGCGAGCAAACCACGCTCACCGCAATCTCACGGGACGTGGTGGAACAACCCTGAGGCCAAGAGAATGCGCAGATTGGCCAAATACAAGCTTTACACCACTGAAGAGTTAACATTTAACGGCAGACTTGAAAGCAGAAGAGCGCGGGAGAGCGGAATCGGAATGGGTAGAAGGAAGGAGCAAGATCTGGAGCTAGAGAAAGCTCGTTTAGTGAGCTTGGCTCTTGATTTCGGCTTCGATGAAGACTCCGCCAAAAAATGTTTGGATCGTCTCGTCGCTCTTTACGGTGATGATGGTCAGGATTTTATCACCGTGGAGTACTGTGGTGATGATTTTCTAGCAGCTTTAGCTGATTCAATGCAAGATACTGAGGAGTGGGATGATTTACATGCAATGGAATCAGAAGCTTGTGGAACTTTGACTAACATGCTTGACAAAAATGTTGTCAGATGTAAGTATGAAGATAATGGCATTTCAGGAGGCTACATCAATATTATTGAAGATTCACCTGAAGCTCAGAAACATCATAAAGTAGTGGATTTGGATTCAAGTGATGAGGAAAATGACTTCAAAACTTCAGAGGTAAAATATGCACCTCCAGGGCCCTATTTGAATGATCATGTATTTGCAGGTCAACAATCACCAAAATCAGGGGATTGCAGAAGTAGTATCACTCAGTGCTCAATTTCTTCAACTTCCAGCAAAATACGATGCTTGTCAGCATCAAAGGATGAAAACAGTACTCTCACTTATGAAGAATTACAGGATCTAGATAACATTGAAATGGCAAATGTTGTTATATTTGGAAATAGGACATTTCGACCATTGCAACATCAGGCTTGTAAAGTTGCTTTGGCAAAGCAAGATTGTTTTATTCTTATGCCTACTGGGGGCGGTAAATCCCTTTGCTATCAGCTTCCAGCAACTCTTCAATCAGGCGTTACAGTAGTTGTGTCTCCCTTACTTTCACTTATTCAGGACCAGATAATCACGCTGAACCTCAAGTTTGGCATACCGGCTACATTTTTAAATTCTCAACAAAGTACTTCGCAAGCAGCAACTGTCCTCCAAGAGCTAAGAAAAGACAAACCATCATGCAAGCTCTTGTATGTGACACCTGAGAGAATTGCTGGCAATCAATCATTTCTTGAGGTTCTAAAATGCATGCATCGCAAGGGACAGCTAGCAGGTTTTGTTGTTGATGAGGCACACTGTGTTAGCCAATGGGGACATGATTTTCGGCCTGATTATCGGGGATTAGGATGTCTTAAGCTGAACTTTCCAGATGTACCAGTCATGGCACTGACTGCCACAGCAACCCACTCTGTACGTGAGGACATCTTAAATGCTTTAAGAATACCCCATGCGATTGTTCTTGAAAGAAGCTTTGACAGACCAAACTTGAAGTACGAAGTCATTGTTAAGACAAAGGAGCCACTAAAGCAGCTAGGAAAGCTACTAATGGATCGTTTCAGGAATCAGTGTGGAATCGTATATTGCCTTTCAAAAAGTGAATGTGTAGAGGTCTCAAAATTTTTGAACGAGAAATGCAAGATTAAGACAGTGTATTACCATGCTGGCTTGGCTGCCCGCCAAAGAGTTGCTGTCCAAAGGAAATGGCACGAGGGAGAGGTCCATATTGTATGCGCAACAATTGCTTTCGGAATGGGAATAGACAAGCCTGATGTTCGCTTTGTCATCCACAACACGTTGTCAAAATCAATTGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGATAATCTACCTGCAGACTGCATTGCTCTATACCAGAAGAAGGATTTTAGTAGAGTTGTATGCATGTTAAGAAATGGCCAAGGATATAAAAGGGAAAGTTTCAAGACGGCAATGGCTCAAGCCCAGAAGATGCAACAGTATTGTGAACTAGAGGATGAATGCAGGAGGCAAACTTTACTCAAACACTTTGGAGAATCTTTTGACAGAAAAGCCTGCAAATATGGGTCTAACGCGTGTGATAACTGTCTCAAGAGTGTTCGGTGA 2100 0.4314 MDELRPYSDGAELDAIFDDDVWRRTTASKPRSPQSHGTWWNNPEAKRMRRLAKYKLYTTEELTFNGRLESRRARESGIGMGRRKEQDLELEKARLVSLALDFGFDEDSAKKCLDRLVALYGDDGQDFITVEYCGDDFLAALADSMQDTEEWDDLHAMESEACGTLTNMLDKNVVRCKYEDNGISGGYINIIEDSPEAQKHHKVVDLDSSDEENDFKTSEVKYAPPGPYLNDHVFAGQQSPKSGDCRSSITQCSISSTSSKIRCLSASKDENSTLTYEELQDLDNIEMANVVIFGNRTFRPLQHQACKVALAKQDCFILMPTGGGKSLCYQLPATLQSGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQSTSQAATVLQELRKDKPSCKLLYVTPERIAGNQSFLEVLKCMHRKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGCLKLNFPDVPVMALTATATHSVREDILNALRIPHAIVLERSFDRPNLKYEVIVKTKEPLKQLGKLLMDRFRNQCGIVYCLSKSECVEVSKFLNEKCKIKTVYYHAGLAARQRVAVQRKWHEGEVHIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPADCIALYQKKDFSRVVCMLRNGQGYKRESFKTAMAQAQKMQQYCELEDECRRQTLLKHFGESFDRKACKYGSNACDNCLKSVR 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0065 699 CDD SF2_C_RecQ 490 623 - -
Dere02g0065 699 FunFam ATP-dependent DNA helicase 490 697 - -
Dere02g0065 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 634 IPR027417 -
Dere02g0065 699 Gene3D - 256 489 IPR027417 -
Dere02g0065 699 Pfam Helicase conserved C-terminal domain 507 613 IPR001650 -
Dere02g0065 699 PANTHER DNA HELICASE RECQ FAMILY MEMBER 277 696 - -
Dere02g0065 699 CDD DEXHc_RecQ 292 489 - -
Dere02g0065 699 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 421 430 IPR002464 -
Dere02g0065 699 Pfam RecQ zinc-binding 626 695 IPR032284 -
Dere02g0065 699 SMART helicmild6 532 614 IPR001650 -
Dere02g0065 699 SMART ultradead3 294 498 IPR014001 -
Dere02g0065 699 FunFam ATP-dependent DNA helicase 279 489 - -
Dere02g0065 699 NCBIfam RecQ family ATP-dependent DNA helicase 292 697 IPR004589 GO:0004386|GO:0006310
Dere02g0065 699 Gene3D - 490 698 IPR027417 -
Dere02g0065 699 Pfam DEAD/DEAH box helicase 300 468 IPR011545 GO:0003676|GO:0005524
Dere02g0065 699 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 504 654 IPR001650 -
Dere02g0065 699 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 306 482 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0065 Dere-ChrDere02 710467 717589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0065 423 612 Eukaryotic Initiation Factors Gene Family AT5G11170 26.154 1.90e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0065 02 710467 717589 Dere02g0065 02 710467 717589 ECH