Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0058 ATGGCTCACACCAGCAACAATGTCGCTGGGGTCGACAACACGTTCAGAAGAAAATTTGATCGAGAGGAGTATTTGGAACGAGCTCGAGAGCGTGAGAGGCAGGAGGAGGAGGCACGATCTAGACCCAAAACTAAAGGTCCAACAGTACAGAGGAAACCCTTGAAACACAGAGATTATGAAGTGGACCTTGAATCCCGCTTGGGAAAAACTCAGGTTGTTACTCCAGTTGCACCACTAAGCCAACAGGCTGGATACTACTGCTCAGTTTGCGAGTGTGTGGTCAAGGATTCTGCAAACTACTTAGATCATATTAATGGAAAGAAACATCAAAGAGCTCTGGGAATGTCAATGCGAGTGGAACGTGCTTCTCTTGAACAGGTTCAGGAACGATTTGAAGTTCTTAAAAAGCGTAAAGCTCTTGGCAGCTTCACGGAGCAAGATCTTGATGACCGGATCTTAAAACAGCAACAAGAGGAGGAAGAAAGAAAGAGACAGCGTCGTGAAAGGAAAAGAGAAAAGAAAAAGGAGAAGGAAGTTGAAGAAGCTCCTGAAACAGATCCTGATGTTGCAGCTATGATGGGATTTGGTGGTTTTCGGTCATCCAAGAAATGA 612 0.451 MAHTSNNVAGVDNTFRRKFDREEYLERARERERQEEEARSRPKTKGPTVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKALGSFTEQDLDDRILKQQQEEEERKRQRRERKREKKKEKEVEEAPETDPDVAAMMGFGGFRSSKK 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0058 203 MobiDBLite consensus disorder prediction 22 56 - -
Dere02g0058 203 Coils Coil 117 137 - -
Dere02g0058 203 MobiDBLite consensus disorder prediction 22 44 - -
Dere02g0058 203 Coils Coil 21 41 - -
Dere02g0058 203 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Dere02g0058 203 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 10 203 IPR040107 GO:0000398|GO:0005681
Dere02g0058 203 MobiDBLite consensus disorder prediction 151 203 - -
Dere02g0058 203 MobiDBLite consensus disorder prediction 151 184 - -
Dere02g0058 203 Pfam Zinc-finger of C2H2 type 85 109 - -
Dere02g0058 203 Coils Coil 153 182 - -
Dere02g0058 203 SUPERFAMILY beta-beta-alpha zinc fingers 80 126 IPR036236 -
Dere02g0058 203 FunFam zinc finger matrin-type protein 2-like 79 117 - -
Dere02g0058 203 Gene3D Classic Zinc Finger 79 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0058 Dere-ChrDere02 680952 683605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0058 4 147 C2H2 Transcription Factor Family AT3G05760 81.250 1.68e-84 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere02g0058 zf-C2H2_jaz 1.9e-06 CL0361