Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0035 ATGGATTTCCAGGGATTTTTGAATGACTTGCAGGATTGGGAACTTTCTCGAAAGGACAAAGCGCAAACAATGAAGTCACAAGCGCATCAAAAGGAAAAAGGTTCATCTTCTCGAAATACTGGTTCAGTGGGTGTGGAGACCGCATCAAGAGGAGAAACTTTTACGTTTGATTATGCGAAAAGTACTTCAGGACAATATGATTTTTCAAGGAACAAAGATCCTTTGAGTCATGTCCACAGTAGTTTCACCACTGAAGATGTTCCTGATGCTGCTTCCGAGAAAGAGCTGGGTAATGAATTCTTCAAGCAAAAGAAGTATAAGGAAGCTATTGACTGTTATTCAAGAAGCATTGCCTTGTTGCCAACAGCTGTAGCATATGCAAATAAAGCAATGGCCTATATCAAACTCAGAAGATTCCAAGAATCTGAGGATGACTGTACAGAGGCCTTAAATCTAGATGATCGTTACATAAAAGCATACTCACGACGAGCAACAGCTAGAAAAGAACTTGGGAAACTTAAAGAATCAATGGAGGATGCCGAGTTTGCTCTGCATTTGGAACCTGACAATCAAGAAATCAAGAAACAGTATGCGGATATCAAGTCTTTGTATGAGAAAGCAATTCTTCAGAAAGCATCTGGAGCTTTGAGGAGCTCTCTACAGGGAACTCAAAAAGTGGGAAAGTCAGAGACAAATATTAGTAGGGCCAGCTTTAATCCTGTATCCAATGGTACTCAAAAGTCAGGGCCCACTGAAGTTCAAGATCACACTAAGAGCAACGATAAAAATATTCCTACAAAAGCATCACTCAAGTTGGAGGAACTAGATAACAAGGATAAAAGATCTGGAAGCAAGATTGGAGCACAAGAAGTTGATAGTTACAGTCCAAGCCAAAGCGTGGAGAATGTTAAGCGAATTCACAGAATTGATAAGCAAGAAGTGAAGGCATCTATTCAAAATCTCGCTTCTCGAGCGGCATCTCGAGCCATGGCTGAAGCTGCAAAAAATATAACACCACCCACTTCAGCTTATCAGTTTGAGGTCTCGTGGAGAGGGTTTTCAGGTGATCCTACTCTACAGGCTCGTCTGTTAAAGGCCATATCTCCTCAAGAATTACCAAAGATATTCAAAAATGCCTTATCTTCTGTGCTACTTATCGACATCATAAAATGTGTGGCATCCTTTTTCACTGAAGATCCAGCTCTGGCTGTCAGTTACATAGAGCGCTTGACCAAGGTATCAAGATTTGACATGCTCATTATGTGTCTTCCACCAACAGAGAAGGATGATCTCCGCAAGGTCTGGGGGGAAGTGTTCTGTAGCGAGGCAACTCCTATGGAGTATGCAGAGATTCTTGACAACCTCCGATTTAAATACTGCCTTAGACATTGA 1392 0.4145 MDFQGFLNDLQDWELSRKDKAQTMKSQAHQKEKGSSSRNTGSVGVETASRGETFTFDYAKSTSGQYDFSRNKDPLSHVHSSFTTEDVPDAASEKELGNEFFKQKKYKEAIDCYSRSIALLPTAVAYANKAMAYIKLRRFQESEDDCTEALNLDDRYIKAYSRRATARKELGKLKESMEDAEFALHLEPDNQEIKKQYADIKSLYEKAILQKASGALRSSLQGTQKVGKSETNISRASFNPVSNGTQKSGPTEVQDHTKSNDKNIPTKASLKLEELDNKDKRSGSKIGAQEVDSYSPSQSVENVKRIHRIDKQEVKASIQNLASRAASRAMAEAAKNITPPTSAYQFEVSWRGFSGDPTLQARLLKAISPQELPKIFKNALSSVLLIDIIKCVASFFTEDPALAVSYIERLTKVSRFDMLIMCLPPTEKDDLRKVWGEVFCSEATPMEYAEILDNLRFKYCLRH 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0035 463 Pfam Potential Monad-binding region of RPAP3 339 428 IPR025986 -
Dere02g0035 463 MobiDBLite consensus disorder prediction 28 46 - -
Dere02g0035 463 MobiDBLite consensus disorder prediction 219 253 - -
Dere02g0035 463 ProSiteProfiles TPR repeat profile. 90 123 IPR019734 GO:0005515
Dere02g0035 463 Gene3D Tetratricopeptide repeat domain 79 188 IPR011990 GO:0005515
Dere02g0035 463 MobiDBLite consensus disorder prediction 18 46 - -
Dere02g0035 463 MobiDBLite consensus disorder prediction 254 286 - -
Dere02g0035 463 Pfam Tetratricopeptide repeat 125 153 IPR019734 GO:0005515
Dere02g0035 463 MobiDBLite consensus disorder prediction 219 294 - -
Dere02g0035 463 SMART tpr_5 124 156 IPR019734 GO:0005515
Dere02g0035 463 SMART tpr_5 90 123 IPR019734 GO:0005515
Dere02g0035 463 SMART tpr_5 157 190 IPR019734 GO:0005515
Dere02g0035 463 Pfam Tetratricopeptide repeat 94 122 IPR001440 GO:0005515
Dere02g0035 463 ProSiteProfiles TPR repeat profile. 157 190 IPR019734 GO:0005515
Dere02g0035 463 PANTHER OS05G0129900 PROTEIN 1 462 - -
Dere02g0035 463 SUPERFAMILY TPR-like 86 203 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0035 Dere-ChrDere02 311522 316942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0035 83 201 Calmodulin-binding Proteins AT5G48570 30.370 5.36e-09 56.6