Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0032 ATGATGAATAATAATTACAGGCTAAATACTCTTGGATCTTGTTCCGATGAAGCTGTTAGAGTTGCTTCTGCTTCTGCTACTAATTCTGAATTGCAACGTGGGCCGGTAGCTGCTAACTACCTCCAGCTCGAAGCGCCTGAGCCGGAACAATCCGGGTCAGATGGGTCGGATCGGTGGATAAAGACCCAGATCGCCAGTCACCCTCTTTATCCTAATTTAGTATCTGCATACATAGAGTGCCAAAAGGTTGGAGCTCCACCAGAACTAACAACCCTCCTTGAAGAAATAGGGCAGGAAAACCACCCCATCAATGCTTCCCGGGAGATAGGAGACGATCCTGAGCTTGATGAGTTCATGGAATCGTACTGCGGAGTTCTACATAGATACAAAGAGGAGTTGTCCAGGCCCTTTAACGAAGCCACCTTGTTTCTGTGCAATATTGAATCACAACTCAGCAACCTTTGTAAGGGAACACTCACAAATTCACCGTCTCATCGCTCAGATGGGGCAAATGGGAGTTCAGAGAAGGAAATAGGTTGTGGGGATGCAGAAGCAAGTGAAGGTGATGAATGCTGTGGCAGTGGTGCAGGTGATCAAGAGCTAAAAGAAATGCTGCTTCGTAAGTACAGTGGCTATCTCAGCAGTTTGAGAAAGGAGTTCTTAAAGAAGAGGAAAAAGGGTAAGCTTCCAAAGGATGCAAGGATGGCACTCCTTCAATGGTGGAACTCCCACTATAGGTGGCCTTATCCTACGGAAGAGGAGAAACTGAAGCTGTCAGAAATGACAGGACTAGATCAAAAGCAGATCAATAATTGGTTCATCAATCAGAGGAAACGGCACTGGAAACCATCTGAAGATATGCGTTTTTCAATAATGGAGGGTGTCAGTGGTGCTGACATAGGTGAAGGAGGACCACCTCAACGCTATGGATTCTGA 936 0.4615 MMNNNYRLNTLGSCSDEAVRVASASATNSELQRGPVAANYLQLEAPEPEQSGSDGSDRWIKTQIASHPLYPNLVSAYIECQKVGAPPELTTLLEEIGQENHPINASREIGDDPELDEFMESYCGVLHRYKEELSRPFNEATLFLCNIESQLSNLCKGTLTNSPSHRSDGANGSSEKEIGCGDAEASEGDECCGSGAGDQELKEMLLRKYSGYLSSLRKEFLKKRKKGKLPKDARMALLQWWNSHYRWPYPTEEEKLKLSEMTGLDQKQINNWFINQRKRHWKPSEDMRFSIMEGVSGADIGEGGPPQRYGF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0032 311 SMART ELK_2 200 221 IPR005539 GO:0003677
Dere02g0032 311 SMART ELK_2 114 134 IPR005539 GO:0003677
Dere02g0032 311 Pfam ELK domain 200 221 IPR005539 GO:0003677
Dere02g0032 311 ProSitePatterns 'Homeobox' domain signature. 258 281 IPR017970 GO:0000981|GO:0006355
Dere02g0032 311 SUPERFAMILY Homeodomain-like 222 291 IPR009057 -
Dere02g0032 311 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 53 290 - -
Dere02g0032 311 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677|GO:0005634
Dere02g0032 311 CDD homeodomain 232 284 IPR001356 GO:0003677
Dere02g0032 311 ProSiteProfiles ELK domain profile. 200 220 IPR005539 GO:0003677
Dere02g0032 311 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Dere02g0032 311 SMART HOX_1 222 287 IPR001356 GO:0003677
Dere02g0032 311 MobiDBLite consensus disorder prediction 162 182 - -
Dere02g0032 311 ProSiteProfiles 'Homeobox' domain profile. 220 283 IPR001356 GO:0003677
Dere02g0032 311 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Dere02g0032 311 Pfam Homeobox KN domain 240 279 IPR008422 GO:0003677|GO:0006355
Dere02g0032 311 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Dere02g0032 311 Gene3D - 218 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0032 Dere-ChrDere02 283672 287233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0032 15 302 Homeobox Transcription Factor Family AT1G23380 51.864 1.62e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dere02g0032 KNOX2 5.3e-24 No_clan