Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0028 ATGCAAGGGAAGAACACAAGGGTTCCAAAGACTGTAATCAAGGCAGCTCATACCAATTTTAGCACTACTTCCAATGATGCTCCAAAACAGGGCTCGTTTAATAATTCGGAGAGTTTCTACAACAAACTCAGCGACTTGTGGGAGTCCCTTGGACTCAGTTTAATTACTAACGCCCGAGAGTCATTGCTGGACCTGTACCTATTTTACTCCGAGGTGACCAGAAGAGGAGGATATTATCAGGTCAGCAGAGACAGAAAATGGGATGAAGTTGTCTCCGCCTTGAAATTGGATGGCAATAATGTAAAGTTACCTGCTCAACTTGAAAGGTCCTACGCTACTTTTCTTTACCAATTTGAGCAACTCCACCACTACAGGGATCCGGCACAGAAAGCTGTGGCTTACACCTCCTTAGATGTCATAAGCTCAGAAAGGAAGCGGAAATCCGAGTCTATTTTATCTGAATTAATGGATAACGAAGATGGTAAAGTGGTGTCAAAGATGTGCAAGGAAATTACAGGGACCGAGCTTACAGAACAGCAAGTGTTGCTGCCTACACCCTCAAATGACAAGGAAACAAAGAAACGCCGAGGTGCTCCACGGAGACAGAGATCTGCATATCAGATTTTCATCAAGCAGGAATGCGCTCGATTGAGAAGTTGTCATGAGGCATCAGTTGGCTCAAAGGTAATTCACATGGCCATTGATGCATGGAAGAAGATGTCTGAGATTGAGAGACAGCCGTTTGTGGAAGAAAGCAAGATGGAAAAGGGAAGACTGATGGGTGAGATGAACGCTCAGAATGAAGAGCAGAATATTAAGGCTGGTGTTGATTATGACTATTATGTGCCTCCGCAACCTGATGCAGAGACCTCCGTTGCTGGCTTGGCTCCTATAATGACCGAAGAAGAACCCATAGATCCATTACATATTGACTATGATGCTCATTGTTCATTGGATTTACCAACAGAAGCATCAAACAACAACGGGGCTGGAAGAGTTGCAGAGCATCTTTCCACCTCCCCTTTGACTGGTACATCGGTTTGTATTACTTACAAGTGTTCCCTTGTAAATTCCACCTTATGGATAGGATCCGTATTTGGATCGCACAGGGAAAGGAAGAGGAATGGAGTGTATGGGGCCACATAG 1146 0.445 MQGKNTRVPKTVIKAAHTNFSTTSNDAPKQGSFNNSESFYNKLSDLWESLGLSLITNARESLLDLYLFYSEVTRRGGYYQVSRDRKWDEVVSALKLDGNNVKLPAQLERSYATFLYQFEQLHHYRDPAQKAVAYTSLDVISSERKRKSESILSELMDNEDGKVVSKMCKEITGTELTEQQVLLPTPSNDKETKKRRGAPRRQRSAYQIFIKQECARLRSCHEASVGSKVIHMAIDAWKKMSEIERQPFVEESKMEKGRLMGEMNAQNEEQNIKAGVDYDYYVPPQPDAETSVAGLAPIMTEEEPIDPLHIDYDAHCSLDLPTEASNNNGAGRVAEHLSTSPLTGTSVCITYKCSLVNSTLWIGSVFGSHRERKRNGVYGAT 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0028 381 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 189 272 - -
Dere02g0028 381 Pfam HMG-box domain 199 264 IPR009071 -
Dere02g0028 381 Gene3D High mobility group box domain 186 276 IPR036910 -
Dere02g0028 381 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 199 267 IPR009071 -
Dere02g0028 381 ProSiteProfiles ARID domain profile. 33 123 IPR001606 GO:0003677
Dere02g0028 381 SMART ARID_2 30 119 - -
Dere02g0028 381 SMART bright_3 34 124 IPR001606 GO:0003677
Dere02g0028 381 SUPERFAMILY HMG-box 183 263 IPR036910 -
Dere02g0028 381 CDD HMG-box_SF 201 256 - -
Dere02g0028 381 Gene3D - 12 137 IPR036431 GO:0003677
Dere02g0028 381 Pfam ARID/BRIGHT DNA binding domain 36 119 IPR001606 GO:0003677
Dere02g0028 381 SUPERFAMILY ARID-like 30 126 IPR036431 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0028 35 263 ARID Transcription Factor Family AT1G55650 25.000 1.44e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Dere02g0028 ARID 2.5e-11 CL0123