Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0025 ATGGCATCTTTGGAATCAATCGTAGATTCTACTAGTTCAGATACGCACCAGGAAGGCAATCAGAGAAAGCGCAGGAAAATCAGGGACGATACCAGCAAGGATCAGAATTCGGTTACTCCGATTCCATGGAGATCCGAGACAGAGCAGCGGATCTATTCCTCCAAGCTCGTCGAAGCTCTCCGCAACGTTCTTCGCTCGAGTCCTTCATCCACGGCCAAGCCTAGCGGCGGACGTGAAGTTCGTGAGATCGCCAACAGAGTTCTAGCGGTGACGGCGAAGGGCAGGACTCGGTGGAGTCGGGCGATTCTGGCCACTCCACTCAGCCGAAGAAAGTTCCAGACGCAGCATAAGAAGGTGAAGAAGGCAGCGAACGGATTGAAGAAACCAAAGGTTAGGAGAGAGAGAAGATGGTTACCGGCTGTGCAGAAGAAAGCGCGCGTTCTCAGCCGGTTGATTCCTGGTTGCCGGAAGGTCCCGTTTCCGAGTCTTCTGGAAGAAACCACTGATTATATTTCGGCCTTGGAAATGCAAGTGCGAGCCATGGCAGCACTCACTGAGCTACTCACGGACGGCGAGCCGGCCCCTCGACCGTGA 594 0.5421 MASLESIVDSTSSDTHQEGNQRKRRKIRDDTSKDQNSVTPIPWRSETEQRIYSSKLVEALRNVLRSSPSSTAKPSGGREVREIANRVLAVTAKGRTRWSRAILATPLSRRKFQTQHKKVKKAANGLKKPKVRRERRWLPAVQKKARVLSRLIPGCRKVPFPSLLEETTDYISALEMQVRAMAALTELLTDGEPAPRP 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0025 197 MobiDBLite consensus disorder prediction 16 33 - -
Dere02g0025 197 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 44 188 IPR044660 GO:0006355
Dere02g0025 197 MobiDBLite consensus disorder prediction 1 15 - -
Dere02g0025 197 CDD bHLH_AtIBH1_like 130 185 IPR044549 GO:0006355
Dere02g0025 197 MobiDBLite consensus disorder prediction 1 45 - -
Dere02g0025 197 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 188 IPR036638 GO:0046983
Dere02g0025 197 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0025 Dere-ChrDere02 244587 245180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0025 43 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 49.682 1.13e-36 125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3671 01 50934021 50939230 Dere02g0025 02 244587 245180 CCT
Dere02g0025 02 244587 245180 Dere02g0025 02 244587 245180 ECH
Dere01g3671 01 50934021 50939230 Dere02g0025 02 244587 245180 ECH