Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g4016 ATGTGTGGCATATTTGCTTATCTTAATTATAACGTGAACAGAGAAAGGAGATACATCCTGCAGGTACTATTCAATGGCCTCAGGCGATTGGAATACCGTGGCTATGATTCCGCTGGCATCGCCATCGACTCTTCACTTTCTCTCGATTCAAACACTCCTCAATGCTCTTCAATTTCCATCACTCCTTCTCCTCTTATTTTCCGTCAGGAGGGAAACATCGAATCCCTTGTTCAATCCGTCTACCAAGAAGTTGCTGAAGTAGAATTAAATTTGGAGGAATCTTTTTCCACCCATGCTGGAATAGCACATACACGGTGGGCAACTCATGGAGAGCCTTCTCCAAGAAATAGTCATCCTCAGACCTCTGGTGCTGGAGATGAATTCTTGGTTGTTCACAATGGGGTTATTACTAATTATGAGGTTTTGAAGGAAACACTAATACGGCATGGGTTCTCATTTGAATCTGAAACTGACACAGAAGTCATTCCAAAACTTGCGAAGTTTGTTTTTGACAAAGCAAATGAGGCAGAAGGTGACCGTGCTGTGACCTTCAGTCAAGTTGTTCTGGAAGTTATGAGGCATCTTGACGGAGCATATGCCCTTATTTTCAAAAGTCGACATTATCCAAATGAACTAATCGCTTGCAAGCGTGGCAGCCCACTACTCCTAGGTGTGAAAGAATTGACAGAAAATATTGGAAATGGTTCAGCTTTTGAGGATAATAACTTTCTATCTAAAAATGGACACCCCAAAGAATTGTTTTTATCCAGTGATGCCAATGCTGTGGTAGAGCATACAAAGAAGGTTCTGGTTATTGAGGATGGTGAAGTAGTTCATCTCAAGGATGGTGCAGTTACAATTTTGAAGTTTGAAAATGATAAAGGAAAACATGGCGGTTCCCTTTCTAGACCTGCTTCAGTGCAACGGGCATTATCTGTTCTTGAGATGGAGGTTGAGCAAATTAATAAAGGACATTATGAGCATTATATGCAGAAGGAAATTCATGAGCAACCTGATTCTCTTACAACCACAATGAGGGGGAGGCTTATGCGTGGCGGATCCAGCAAATTGAAAACTGTTCTGTTGGGTGGATTGAAGGATCACCTTAAAACAATCAGGCGAAGTAGAAGGATTGTTTTCATTGGATGTGGTACTAGTTATAATGCTGCTTTGGCAGCTAGACCCATATTGGAAGAACTTTCTGGAGTCCCTGTTACCATGGAAATTGCTAGTGATCTGTTGGATCGGCAGGGACCAATATACAGAGAAGATACTGCTGTTTTTGTTAGTCAATCTGGTGAAACTGCAGATACTTTACTTGCACTGCAATATGCATTAGACAATGGTGCATTATGTGTTGGCATAACAAATACTGTTGGGAGTGCAATAGCAAGGAATACACATTGTGGTGTACATATAAATGCTGGTGCTGAGATAGGTGTGGCAAGTACCAAGGCATACACAAGTCAAATAGTAGTGATGGCCATGTTAGCACTTGCAATAGGAGGTGATACAATTTCCAATCAAGCAAGAAGAGAAGCTATTATAGATGGTCTCTTTGACCTGCCAAATAAAGTCAGGGAGGTGCTGAAGCTAGACCAGGAGATGAAGGATCTGGCAAAGTTGTTAATGTCTGAGCAGTCTCTTCTTGTTTTTGGGAGAGGATTTAACTATGCAACAGCTCTGGAGGGTGCTTTGAAAGTAAAGGAAGTGGCTCTTATGCATAGTGAAGGAATACTTGCTGGTGAAATGAAGCATGGTCCTTTGGCATTAGTGGATGAAAATCTTCCTATTATCGTTTTAGCTACTCGTGATGCTTGCTTCAGCAAGCAGCAGTCAGTCATTCAACAACTTCATGCTCGCAAAGGCCGCCTTATAGTTATGTGTTCAAAAGGGGATGCTGCTTCAGTGTGTCCTGGTGAATCTTGTAGGGTAATTGAAGTTCCACCGGTTGAGGATTGTCTTCAACCTGTAATTAATATAATTCCATTACAGTTATTGGCATATCATCTCACCGTACTGAGAGGATTGAACGTTGATCAGCCTCGAAATCTCGCCAAGAGTGTCACAACCCAGTGA 2079 0.4185 MCGIFAYLNYNVNRERRYILQVLFNGLRRLEYRGYDSAGIAIDSSLSLDSNTPQCSSISITPSPLIFRQEGNIESLVQSVYQEVAEVELNLEESFSTHAGIAHTRWATHGEPSPRNSHPQTSGAGDEFLVVHNGVITNYEVLKETLIRHGFSFESETDTEVIPKLAKFVFDKANEAEGDRAVTFSQVVLEVMRHLDGAYALIFKSRHYPNELIACKRGSPLLLGVKELTENIGNGSAFEDNNFLSKNGHPKELFLSSDANAVVEHTKKVLVIEDGEVVHLKDGAVTILKFENDKGKHGGSLSRPASVQRALSVLEMEVEQINKGHYEHYMQKEIHEQPDSLTTTMRGRLMRGGSSKLKTVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSGVPVTMEIASDLLDRQGPIYREDTAVFVSQSGETADTLLALQYALDNGALCVGITNTVGSAIARNTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISNQARREAIIDGLFDLPNKVREVLKLDQEMKDLAKLLMSEQSLLVFGRGFNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPIIVLATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASVCPGESCRVIEVPPVEDCLQPVINIIPLQLLAYHLTVLRGLNVDQPRNLAKSVTTQ 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g4016 692 Pfam Glutamine amidotransferase domain 95 213 - -
Dere01g4016 692 Gene3D - 528 677 - -
Dere01g4016 692 CDD GFAT 2 280 IPR047084 -
Dere01g4016 692 Gene3D - 324 691 - -
Dere01g4016 692 PANTHER GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING 1 692 - -
Dere01g4016 692 FunFam Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 324 544 - -
Dere01g4016 692 ProSiteProfiles SIS domain profile. 539 682 IPR001347 GO:0097367|GO:1901135
Dere01g4016 692 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 2 289 IPR029055 -
Dere01g4016 692 FunFam Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 2 303 - -
Dere01g4016 692 CDD SIS_GlmS_GlmD_1 377 502 IPR035466 -
Dere01g4016 692 SUPERFAMILY SIS domain 323 691 IPR046348 GO:0097367|GO:1901135
Dere01g4016 692 CDD SIS_GlmS_GlmD_2 534 690 IPR035490 -
Dere01g4016 692 ProSiteProfiles SIS domain profile. 368 507 IPR001347 GO:0097367|GO:1901135
Dere01g4016 692 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 299 IPR029055 -
Dere01g4016 692 Pfam SIS domain 372 499 IPR001347 GO:0097367|GO:1901135
Dere01g4016 692 Pfam SIS domain 543 674 IPR001347 GO:0097367|GO:1901135
Dere01g4016 692 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 283 IPR017932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g4016 Dere-ChrDere01 53901881 53907957 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g4016 21 224 PRT Gene Family AT2G16570 25.000 1.92e-06 49.3