Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3996 ATGTTCAAATTCTTGAAAGAGGTGGTGGGTGGATCTGGAACGGGAATCAAAGATCTCCCTTACAATATTGGCCAACCCTACCCTTCTGCTTGGGGATCTTGGACTCACTGCCGCGGTACCGCCAAGGATGATGGATCTCCAGTTTCAATCTTTTCCCTATCTGGGAGTAATGCTCAGGATGGACATTTAGCAGCTGGTCGTAATGGTGTCAAGCGTCTCCGGACAGTCAGGCATCCAAATATTTTGTCATTTCTTCACAGTACAGAGACTGAAACTTTTGACGGTGGTTCTGCTAAGGTTACTATCTATATTGTAACAGAGCCTGTCATGCCACTTTCAGAAAAGATTAAGGAGTTAGGATTAGAAGGTACACAAAGGGATGAATACTATGCTTGGGGGCTGCATCAAATAGCCAAAGCTGTGAGCTTCTTGAATAATGATTGTAAACTTGTTCATGGTAATGTTTGCTTGGCTAGTGTTGTGGTCACACAAACTTTGGACTGGAAACTCCATGCTTTTGATGTTCTTTCAGAATTTGATGGGAGCAATGAAGCTTCTACTGGGCAAATGCTGCAATATGCATGGCTTGTTGGATCACAATACAAACCAACGGAGTTGGCAAAATCTGACTGGACTGCAATCAGAAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGGCTGTCTTATCTATGAGCTATTTTCGGGTGTGAGTTTGGGCAAAACAGAGGAGTTACGCAACACTGCCCCCATTCCTAAGTCTCTGCTTCCAGATTATCAGCGCCTGTTGAGTTCCATGCCTTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTGAATATTTTCAAAATAAGTTGGTAGACACAATACACTTCATGGAAATTCTCAGTTTGAAAGACAGTGTTGAGAAAGACACCTTCTTCCGCAAGCTTCCAAATTTAGCGGAGCAACTTCCTCGCCAGATTGTGTTGAAGAAGTTACTACCTTTATTAGCTTCTGCTCTTGAATTTGGTTCAGCTGCTGCCCCTGCTTTGACAGCATTGTTGAAAATGAGTTCCTGGCTTTCAGCTGAGGAGTTCAGTGTCAAGGTGCTTCCAACTATAACAAAACTCTTTGCCTCCAATGATCGAGCTATTCGAGTTGCTCTTCTTCAACATATTGATCAATTTGGGGAGTCATTATCAGCCCAGGTTGTTGATGAGCAGGTTTACCCTCACGTTGCTACTGGGTTCTCTGACACATCTGCTTTTCTGAGGGAACTGACGCTCAAGGCCATGCTTATATTGGCTCCAAAGCTGTCTCAAAGGACCATGTCAGGGTCATTATTGAAGTACCTGTCTAAGTTACAGGTTGATGAAGAACCAGCAATTCGAACAAATACCACCATCTTGCTAGGAAATATTGCGAGCTACCTAAATGAAGGGACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGACACTTTTCCCCCTGCCAGAGGAGCAGGCATTATGGCCTTATGTGCCACCAGCTCTTATTATGATGTACCTGAAGTTGCAACCCGGATACTTCCTAATGTTGTTGTACTTACAATTGATCCTGACAGTGATGTTCGATCCAAGGCATTTCAAGCTGTTGATCAATTTTTGCAGATAGTAAAGCAATGTTACGACAAGACAAACACAACCGAAACCACTGCAGCTGCTGGCATGGGAATCTCATCAGTTCCTGGAAATGCTAGTTTACTTGGATGGGCTATGAGCTCCTTGACCCTGAAGGGTAAACCTTCTGATCATGCTCCAGTTTCTTCTGTAAGTACCAGTGCACTTGCACCAACATCTTCCAATGTCAGTTCAGTTGTGGATACTCCATCAATGGCACCTATCCATGTAAGATCTACATCTGATTTAGCTGAAATTTCTGTCCCTGCTTCCCCGACGTCAACGGATGGCTGGGGAGAACTGGAGAATGGAATTCATGAAGAGCATGAAAGTGACAAGGATGGTTGGGATGATCTGGAACCGCTCGAAGAGCCAAAGCCATCTCCAGCTCTTGCAAACATTCAAGCAGCTCAAAGGCGGCCAGTCTCTCAACCTGTTTCACAGACAAAGCATGCCTCAGTTTCACGACCTAAAAGTGCAACAAAGTTGAGCAAGGATGAAGATGATGATTTATGGGGCTCCATAGCAGCGCCTGCTCCAAAAACATCAAAACCTTCGGATGTCAAATCTAGTACTACTGATGATGATGATCCCTGGGCTGCCATTGCTGCCCCGGCACCCACTACTAAAGCCAAGCCCTTACTAGCTAGCAGAGGTCGGGGAGCTAAACCTACTGCTCCAAAATTAGGTGCTCAGAGGATTAACCGGACATCATCTGGGATGTAA 2388 0.4451 MFKFLKEVVGGSGTGIKDLPYNIGQPYPSAWGSWTHCRGTAKDDGSPVSIFSLSGSNAQDGHLAAGRNGVKRLRTVRHPNILSFLHSTETETFDGGSAKVTIYIVTEPVMPLSEKIKELGLEGTQRDEYYAWGLHQIAKAVSFLNNDCKLVHGNVCLASVVVTQTLDWKLHAFDVLSEFDGSNEASTGQMLQYAWLVGSQYKPTELAKSDWTAIRKSPPWAIDSWGMGCLIYELFSGVSLGKTEELRNTAPIPKSLLPDYQRLLSSMPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSAAAPALTALLKMSSWLSAEEFSVKVLPTITKLFASNDRAIRVALLQHIDQFGESLSAQVVDEQVYPHVATGFSDTSAFLRELTLKAMLILAPKLSQRTMSGSLLKYLSKLQVDEEPAIRTNTTILLGNIASYLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSYYDVPEVATRILPNVVVLTIDPDSDVRSKAFQAVDQFLQIVKQCYDKTNTTETTAAAGMGISSVPGNASLLGWAMSSLTLKGKPSDHAPVSSVSTSALAPTSSNVSSVVDTPSMAPIHVRSTSDLAEISVPASPTSTDGWGELENGIHEEHESDKDGWDDLEPLEEPKPSPALANIQAAQRRPVSQPVSQTKHASVSRPKSATKLSKDEDDDLWGSIAAPAPKTSKPSDVKSSTTDDDDPWAAIAAPAPTTKAKPLLASRGRGAKPTAPKLGAQRINRTSSGM 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3996 795 ProSiteProfiles HEAT repeat profile. 366 404 IPR021133 -
Dere01g3996 795 SUPERFAMILY ARM repeat 293 555 IPR016024 -
Dere01g3996 795 Gene3D Transferase(Phosphotransferase) domain 1 109 280 - -
Dere01g3996 795 MobiDBLite consensus disorder prediction 600 621 - -
Dere01g3996 795 MobiDBLite consensus disorder prediction 691 713 - -
Dere01g3996 795 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 11 774 - -
Dere01g3996 795 SUPERFAMILY Protein kinase-like (PK-like) 36 287 IPR011009 -
Dere01g3996 795 MobiDBLite consensus disorder prediction 662 678 - -
Dere01g3996 795 Gene3D - 282 558 IPR011989 -
Dere01g3996 795 SMART serkin_6 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3996 795 MobiDBLite consensus disorder prediction 689 795 - -
Dere01g3996 795 MobiDBLite consensus disorder prediction 662 681 - -
Dere01g3996 795 MobiDBLite consensus disorder prediction 596 621 - -
Dere01g3996 795 ProSiteProfiles Protein kinase domain profile. 2 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3996 795 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3996 70 291 MAP Kinase Kinase Kinase AT5G66850 26.891 2.04e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Dere01g3996 None None None