Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3987 ATGGATTTCGATGCCGCGATTTCTATCTCCCGAGCGGCTCTCACCGACTCACCCTCCCTCTCCCAAGATGCAATTTGGCAAATGAAATTGAGATCAAGTGAAACAATGGAATCTGGACCTTATCCTGAGCGTCCAGGAGAATTAGATTGTTCTTACTACATCAGAACAGGTCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCACCTAACAGGAAGCTGGCTATTGCCACTGCAAGGATGAAAGGCGAGTTCCCAGAAAGAATAGGACAACCAGAATGTCAGTATTATCTTAAGACAGGTACTTGCAAATTTGGAGCCACGTGCAAATTTCATCATCCAAGAGAAAAGGCTGGGATCGCTGGAAGAGTTGCTTTAAATAGTTTAGGCTATCCCCTTCGGCCAAATGAACCTGAATGTGCTTATTATTTGAGAACTGGACAATGCAAATTTGGGAGCACTTGCAAATTCCACCATCCTCAGCCAAATAATATGATGGTTTCATTGCGGGGTTCTCCTGTTTATCCTACAATTCATTCTCCAACAACACCAGGTCAGCAGTCATCCTATGCAGGGGGGATTACAAATTGGTCCAGAGCTTCTTATATTCCTAGTCCACGCTGGCAAGGCCCTTCAAGCTATGCACCTTTAATTCTACCTCAGGGAGTGGTTTCAGTTCCTGGGTGGAGTGCATACAGTGGTCAGATTGGATCAGTCTCTACGTCAGACAGTCCACAGCAAACAATAGGAAATGGTCAAATGTATGGAACTTCCCGCCAGGGTGAACCAGCAACAGGATCTCAAGGGACATATTCTCAATTTCGTTCTGGCTCTGTTCCTCTGGGATTCTATGCGCTGCAGAGGGAGAACATATTTCCCGAGAGACCTGGTCAGCCTGAATGCCAATTCTACATGAAGACTGGAGATTGTAAGTTTGGTGCAGTCTGTCGGTTTCATCATCCACGTGAGAGGCTTATACCTGCTCCTGACTGTGTATTGAGTCCCATAGGCCTACCTTTACGTCCGGGAGAGCCTTTGTGTGGCTTCTATTCACGTTATGGCATATGCAAATTTGGTCCAAGTTGCAAGTTTGATCATCCAATGGGAATCTTCGCATACAATATTTCTGCATCACCTTCAGCTGATACCCCAGTCCGTCGTTTATTGGGGTCTTCATCAGGAACTGCTGCATTAAATTTATCATCAGAAGGACTTGTTGAGTCGGGCTCAGTGAAGCCGAGGCGGCTTTCATTGTCAGAGACTAGACAGATATCTTCTGGTGAAGATAGCATTGATGATGAGGGATGA 1311 0.4546 MDFDAAISISRAALTDSPSLSQDAIWQMKLRSSETMESGPYPERPGELDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPREKAGIAGRVALNSLGYPLRPNEPECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTIHSPTTPGQQSSYAGGITNWSRASYIPSPRWQGPSSYAPLILPQGVVSVPGWSAYSGQIGSVSTSDSPQQTIGNGQMYGTSRQGEPATGSQGTYSQFRSGSVPLGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPIGLPLRPGEPLCGFYSRYGICKFGPSCKFDHPMGIFAYNISASPSADTPVRRLLGSSSGTAALNLSSEGLVESGSVKPRRLSLSETRQISSGEDSIDDEG 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3987 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 162 IPR000571 GO:0046872
Dere01g3987 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Dere01g3987 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 71 IPR000571 GO:0046872
Dere01g3987 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 344 369 IPR000571 GO:0046872
Dere01g3987 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Dere01g3987 436 SUPERFAMILY CCCH zinc finger 300 326 IPR036855 GO:0046872
Dere01g3987 436 Gene3D - 132 180 - -
Dere01g3987 436 ProSiteProfiles Zinc finger C3H1-type profile. 44 72 IPR000571 GO:0046872
Dere01g3987 436 FunFam CCCH type zinc finger protein 294 381 - -
Dere01g3987 436 SUPERFAMILY CCCH zinc finger 49 72 IPR036855 GO:0046872
Dere01g3987 436 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Dere01g3987 436 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Dere01g3987 436 SUPERFAMILY CCCH zinc finger 345 369 IPR036855 GO:0046872
Dere01g3987 436 PANTHER PROTEIN PHOSPHATASE RELATED 31 389 - -
Dere01g3987 436 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Dere01g3987 436 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Dere01g3987 436 SMART c3hfinal6 342 369 IPR000571 GO:0046872
Dere01g3987 436 SMART c3hfinal6 135 162 IPR000571 GO:0046872
Dere01g3987 436 SMART c3hfinal6 44 71 IPR000571 GO:0046872
Dere01g3987 436 ProSiteProfiles Zinc finger C3H1-type profile. 342 370 IPR000571 GO:0046872
Dere01g3987 436 FunFam Zinc finger nuclease 2 43 120 - -
Dere01g3987 436 MobiDBLite consensus disorder prediction 408 436 - -
Dere01g3987 436 ProSiteProfiles Zinc finger C3H1-type profile. 135 163 IPR000571 GO:0046872
Dere01g3987 436 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Dere01g3987 436 Gene3D - 294 379 - -
Dere01g3987 436 Gene3D - 46 126 - -
Dere01g3987 436 SUPERFAMILY CCCH zinc finger 138 163 IPR036855 GO:0046872
Dere01g3987 436 MobiDBLite consensus disorder prediction 237 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3987 Dere-ChrDere01 53596871 53602100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3987 25 435 C2H2 Transcription Factor Family AT3G02830 61.995 5.53e-180 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere01g3987 zf-CCCH 6.6e-10 CL0537