Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3985 ATGGGATTGATCATGGAAGAGGAAGGAGACCACATTCTGCTTCCGCCGCCTAATTTCTCAATGGTTGAGGACAACATTTTTCGGTCCAGCTTCCCACGTCCTGCCAATTTTCCCTTCATCCAAACCCTAAATCTTCGATCCATCATATACTTGTGTCCCGAACCATATCCGCAAGAAAATTTGGAGTTTCTTCGGTCACAGGACATTCAGCTGTTTCAGTTTGGAATTGAGGGAAAGACGGAGCTTTCTGTACCTATGCTCAAGGATACTATCATGGATGCTCTGAAAGTTCTGATTGATATTAAAGCTACTTTACTTATTGCAATTTCAGATGTGAGAAATCACCCAATCTTAATCCATTGCAAACAAGGAAAGCACCGAACAGGTTGCCTCGTTGGTTGCTTGAGAAAATTGCAGAAGTGGTGTTTGTCTTCTGTGTTTGAGGAGTACAACCGATTCGCTGGAGCTAAATCCAGGATAGCGGATTTAAGATTTATAGAATCATATGACATCCTATGCCTGAGGCAGTGCCTGTACAGCATCATATACCAGTACCAAGGATATAATTCAAAGAAGAGGCGATTGTTGTATAAAGAAGAGAATTTACAGAAGCCCCAGATAACCTCATGTAATCGTTGTTTTAAAGCGAGTCTAGGGTTTCGGAGGCCTCCTTCTTCACCCTTTTCTTCTTCCTCTTCAATTAGTTTTCTGATCGATCACCTAATCCTTTGA 732 0.418 MGLIMEEEGDHILLPPPNFSMVEDNIFRSSFPRPANFPFIQTLNLRSIIYLCPEPYPQENLEFLRSQDIQLFQFGIEGKTELSVPMLKDTIMDALKVLIDIKATLLIAISDVRNHPILIHCKQGKHRTGCLVGCLRKLQKWCLSSVFEEYNRFAGAKSRIADLRFIESYDILCLRQCLYSIIYQYQGYNSKKRRLLYKEENLQKPQITSCNRCFKASLGFRRPPSSPFSSSSSISFLIDHLIL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3985 243 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 14 170 IPR029021 -
Dere01g3985 243 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 183 - -
Dere01g3985 243 PRINTS Plant and fungal dual specificity phosphatase signature 69 83 IPR020428 GO:0016791
Dere01g3985 243 PRINTS Plant and fungal dual specificity phosphatase signature 13 30 IPR020428 GO:0016791
Dere01g3985 243 PRINTS Plant and fungal dual specificity phosphatase signature 50 63 IPR020428 GO:0016791
Dere01g3985 243 PRINTS Plant and fungal dual specificity phosphatase signature 86 100 IPR020428 GO:0016791
Dere01g3985 243 FunFam probable tyrosine-protein phosphatase At1g05000 12 173 - -
Dere01g3985 243 ProSitePatterns Tyrosine specific protein phosphatases active site. 119 129 IPR016130 GO:0016311|GO:0016791
Dere01g3985 243 ProSiteProfiles Dual specificity protein phosphatase domain profile. 18 194 IPR020422 GO:0006470|GO:0008138
Dere01g3985 243 Pfam Tyrosine phosphatase family 13 171 IPR004861 -
Dere01g3985 243 Gene3D Protein tyrosine phosphatase superfamily 12 173 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3985 Dere-ChrDere01 53577666 53581499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3985 1 206 Protein tyrosine phosphatase (PTP) family AT3G02800 65.550 2.64e-97 281