LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g3982	ATGGGAGAAGGCGCAGGGTTTCAGGGGTTTTGTGAATCGTCGCCAGGTAAACTGAGCATCGCAGAGAGAAGGGGATTCTGTTCAGATGCAGCCAGAATCAATACGGCCCGCTTTCGCACCACAAGCCCATTGGCTTCTCCCGCAACTCGTTCCCCCTGTCTCACTATACCCCCCGGTATTAGTCCCACCGCCTTGCTTGACTCTCCTATCATGCTTCCCTATTCTCAGGCAATGCCATCTCCCACCACTGGAACTTTTCTGCTGCCTCCTCCCAGTCATGAAGGATCAATTCTCAGTTCTGTCACTCTCGGTGAAGGGGATGGCGCCACTGGCAGTGATGTTGCTTCCTCCTTCAAATTCAATCCCCAAACCATACGTAATCCTCTACCTGCCTCCTCTGTTTCTGAAAGTCAGGTTTCTAACCATTGCATCATGGCCAACGGAGGAATTTCAGACTGCCAGCCACTTGTGCCAGTCCAACCACCGTTAGATTTTGCAACTCCCCCTGAGTTTCCAAAGGGACATACAACAAAAAGTGAGGTCCATTCATACGATAATGTGAAAATGATGCATGATGCAATTTGTAATGCTAACAATGTCGAGATGCAAATGCATCGTTCTGAAGAAGCTACTGATGAAAGCTCTCTGCCTAAAAAGGCTAACAAGGATATTGGGCAGCATCATCTTTTAGGAGGAGACAAGAGAGAAACACCCTATTCAATGGGAGTGGTAAGGACCTCAGAGGATGGATACAATTGGAGAAAATATGGGCAGAAGCAGGTAAAAGGTAGTGAATATCCTAGGAGCTATTATAAATGTACCCATCCTAATTGTCTGGTCAAGAAAAAGGTGGAACGATCCCTTGATGGCCAAATAACCGAAATTATCTACAAAGGCACTCATAATCATGGAAAACCTCAACCTAATCGCCGGCCATCACTGGGATCAGCACTTTCTACTGATGAGATGTCAGACATGGGTGAAGGTAGCGGAACCTGTGTTAAAGTTGATGGCGGTTCTATTTGGAAAAGTATTCAGTCAGGGATGAAGGATATGAAACACAATTTGGATTGGAAGGCTGATAATCAGGAAAGGACATCCTCAACTTCTGTTGTAACTGAACTCTCAGATCCTATATCAACTAACAAAGGTAAACCTATCTGTATGTTTGAGTCAGAGGACACTCCAGAGCTTTCTTCTACAATTGCTAGTCAAGATGATGATGAAGATGGAGCAACTCAAGGAAGCATATCCCTTGAAGAGGATGCAGATGATGAAGGATCTGAGTCAAAAAGAAGGAAGAAAGAGAGCTGCTTGATTGAATCGAATTTTGCTTCTAGGGCAGTCCGTGAGCCAAGGGTAGTAGTCCAAATTGAGAGTGAAGTAGACATACTTGATGATGGTTATCGCTGGCGAAAGTATGGACAGAAAGTTGTCAAAGGAAATCCAAACCCTAGGAGCTACTACAAATGCACAAGTGCTGGATGTTCTGTGAGGAAACATGTGGAAAGGGCTTCACACGATCTAAAATTTGTGATTACTACTTATGAGGGAAAACATAACCATGAAGTGCCCACCGCTAGAAGCAACAATCAGATGAGCTCAAGTGGTGCTTGCGTACTTCCAAGTGGAGCTAATGCACAAGTGGCTCTTACATTACCTGGGAATGTCGCTATTCCGAAGCCAGAAACTCAAGTTCAAACCATTGCACCTCACTTTGATAGAAAACCTGAATTTAGCACTGACTTTCTAAGGCCCGGCTTTGTTGGAAGTTTTAGTGATGATATGAAATTTGGGTCTTCCTCCATAAGCCAAATGAAGTATTCTCCCTTTGGTAATACCTTGCCTTATGGCTCCTATGAACTGATTCCTGACTGTAGTGCTACAGCGCAAGCTGGTTCTATTGCCCCATTGTTCCCTGACTTCCCAATGTCTCTACCGTTGAATCTTCCTTCATCTGGAAATTTTCCTCTAGCAGGACTTAATTTAAATTGTGTAAAACCTGTGGGTCCAATCCAGTCTTTTCTTTCAGGGCAGCAGCTGAAAGAAGTTGATACGGGTTTACTGAGGCCTAAACAAGAGCAGAAGGATAATATTATATATGATACATGCGTACCCGTTGTTGATCATGCAAGTTCTTCGCTCACTTCATCGTCACCATCATCGTCAGTATATCACCGTGTCATGCAAAATTTTCCTTCATAA	2205	0.4422	MGEGAGFQGFCESSPGKLSIAERRGFCSDAARINTARFRTTSPLASPATRSPCLTIPPGISPTALLDSPIMLPYSQAMPSPTTGTFLLPPPSHEGSILSSVTLGEGDGATGSDVASSFKFNPQTIRNPLPASSVSESQVSNHCIMANGGISDCQPLVPVQPPLDFATPPEFPKGHTTKSEVHSYDNVKMMHDAICNANNVEMQMHRSEEATDESSLPKKANKDIGQHHLLGGDKRETPYSMGVVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCLVKKKVERSLDGQITEIIYKGTHNHGKPQPNRRPSLGSALSTDEMSDMGEGSGTCVKVDGGSIWKSIQSGMKDMKHNLDWKADNQERTSSTSVVTELSDPISTNKGKPICMFESEDTPELSSTIASQDDDEDGATQGSISLEEDADDEGSESKRRKKESCLIESNFASRAVREPRVVVQIESEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCSVRKHVERASHDLKFVITTYEGKHNHEVPTARSNNQMSSSGACVLPSGANAQVALTLPGNVAIPKPETQVQTIAPHFDRKPEFSTDFLRPGFVGSFSDDMKFGSSSISQMKYSPFGNTLPYGSYELIPDCSATAQAGSIAPLFPDFPMSLPLNLPSSGNFPLAGLNLNCVKPVGPIQSFLSGQQLKEVDTGLLRPKQEQKDNIIYDTCVPVVDHASSSLTSSSPSSSVYHRVMQNFPS	734

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g3982	734	ProSiteProfiles	WRKY domain profile.	242	306	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere01g3982	734	FunFam	WRKY transcription factor 33	452	518	-	-
	Dere01g3982	734	MobiDBLite	consensus disorder prediction	394	412	-	-
	Dere01g3982	734	MobiDBLite	consensus disorder prediction	357	436	-	-
	Dere01g3982	734	MobiDBLite	consensus disorder prediction	362	380	-	-
	Dere01g3982	734	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	68	532	IPR044810	GO:0003700
	Dere01g3982	734	MobiDBLite	consensus disorder prediction	306	326	-	-
	Dere01g3982	734	SUPERFAMILY	WRKY DNA-binding domain	244	306	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere01g3982	734	SUPERFAMILY	WRKY DNA-binding domain	458	525	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere01g3982	734	SMART	WRKY_cls	247	305	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere01g3982	734	SMART	WRKY_cls	465	524	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere01g3982	734	Gene3D	WRKY domain	240	307	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere01g3982	734	MobiDBLite	consensus disorder prediction	299	331	-	-
	Dere01g3982	734	Gene3D	WRKY domain	452	518	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere01g3982	734	FunFam	WRKY transcription factor	235	307	-	-
	Dere01g3982	734	ProSiteProfiles	WRKY domain profile.	460	525	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere01g3982	734	Pfam	WRKY DNA -binding domain	466	523	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere01g3982	734	Pfam	WRKY DNA -binding domain	248	303	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g3982	Dere-ChrDere01	53570903	53575070	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g3982	20	528	WRKY Transcription Factor Family	AT5G56270	42.912	2.19e-104	332

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Dere01g3982		WRKY	1.4e-24	CL0274