Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3976 ATGGTTAGGCCAGGCCAAGCAGTAAGAGGCCAAGACGTGGATATTCAGGAATCCCTTCTGCTGTTTCTCTTTTTCGTTCATCCCTTCCGAATTAAGTGCAGAGAGACTCAGACTCACCCACCTTCCGATCCATTTTCGTCTTGGTTTATGAGCTCGAAGGAGAGACCCACTCTTGGTGGTACGCGGATTAAGACCCGCAAACGGAATATTGCAGCGCCACTGGACCCTGCAGCATTTTCGGATGCAGTGGTCCAGATTTACTTGGATAATGCTGGTGATCTGGAACTTGTGGCTAAGAGCATTGAGTCCTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAGGTTGTTTTCACTGGGGGGCGTACGCAACCTGGAACTACCAAGCCTGATGAGGGGGAGCGCCATCCTTACTCTATAATAGAGTGTGAGCCAAAGCGTGAAGTCATATCACCGTCTGTAATCTACATACAAAAGATTTTGCGGCGACGACCATTTCTCATCAAGAATCTTGAAAATGTCATGCGAAAATTTCTGCAGTCCTTGGAGCTTTTTGAGGAAAATGAACGGAAAAAGTTGGCTATTTTTACGGCACTTGCATTCTCCCAGAAGCTATCTGGTCTTCCACCGGAGACTGTGTTCCAGCCACTTCTCAAAGATAATCTTGTGGCCAAAGGGCTAGTTTTATCATTTATAACTGACTTCTTTAAAGAGTATCTGGTTGATAACAGCCTTGATGATCTTATATCAATTCTGAAGCGGGGAAAAGTGGAGGACAATCTGTTGGACTTCTTCCCCCCTGCAAAAAGATCTAATGATGCTTTTGCTGAGCATTTCAACAAGGAAGGACTGGCAGCCTTGGTGGAGTATAATGAGAAGAAAATATTTGAGGTGAAACTTAAGGAAATGAAATCTGCTCTAACTACCCAGATAACAGAGGAAACTGATATATCTGAAGTCATTGAAACTGTGAAGCTACGAGTTAGAGATGCTAAGTTACCAGACACTGAGGTTGTGAGGGTTCTGTGGGATGTCTTGATGGATGCTGTTCAGTGGTCGGGGAAAAATCAGCAACAGAATGCAAATGCAGCACTGCGCCAGGTGAAAACTTGGGCGAAACTGTTGAATACTTTCTGCACCAGTGGGAAACTTGAGCTGGAACTAATGTACAAAGTACAGATGCAATGCTATGAGGATGCTAAACTGATGAAGCTGTTCCCTGAGATTGTTAGGTCTCTTTATGACCAAGATGTGCTGGCAGAAGATACTATTCTTCATTGGTTCCGAAAAGGAACAAACACCAAGGGCAGGCAAACCTTTGTTAAGGCACTGGAACCCTTTGTTAACTGGTTGGAGGAAGCAGAAGAGGAGGAATAA 1383 0.444 MVRPGQAVRGQDVDIQESLLLFLFFVHPFRIKCRETQTHPPSDPFSSWFMSSKERPTLGGTRIKTRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELVAKSIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHPYSIIECEPKREVISPSVIYIQKILRRRPFLIKNLENVMRKFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLSFITDFFKEYLVDNSLDDLISILKRGKVEDNLLDFFPPAKRSNDAFAEHFNKEGLAALVEYNEKKIFEVKLKEMKSALTTQITEETDISEVIETVKLRVRDAKLPDTEVVRVLWDVLMDAVQWSGKNQQQNANAALRQVKTWAKLLNTFCTSGKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILHWFRKGTNTKGRQTFVKALEPFVNWLEEAEEEE 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3976 460 Pfam eIF4-gamma/eIF5/eIF2-epsilon 387 460 IPR003307 GO:0005515
Dere01g3976 460 Coils Coil 170 190 - -
Dere01g3976 460 ProSiteProfiles W2 domain profile. 295 460 IPR003307 GO:0005515
Dere01g3976 460 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 51 460 - -
Dere01g3976 460 Gene3D - 291 460 - -
Dere01g3976 460 SUPERFAMILY ARM repeat 302 457 IPR016024 -
Dere01g3976 460 SMART 542_3 374 459 IPR003307 GO:0005515
Dere01g3976 460 CDD W2_eIF5C_like 265 453 IPR043510 -
Dere01g3976 460 FunFam ARM repeat superfamily protein 292 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3976 Dere-ChrDere01 53543034 53552205 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3976 349 456 Eukaryotic Initiation Factors Gene Family AT2G34970 31.818 8.98e-09 55.8